AFS specifications

Unique identifier:
OMICS_14708
Software type:
Pipeline/Workflow
Restrictions to use:
None
Output data:
Estimation of relative species proportions
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Name:
All-Food-Seq
Interface:
Command line interface
Input data:
DNA short read dataset
Biological technology:
Illumina
Programming languages:
Perl
Version:
0.3
Requirements:
BWA, SAMtools

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AFS distribution

download

AFS support

Maintainer

  • Thomas Hankeln <>

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Publications

Institution(s)

Institute of Computer Science, University of Mainz, Germany; Institute of Molecular Genetics, Johannes Gutenberg University, Mainz, Germany; Official Food Control Authority Canton Zürich, Zürich, Switzerland; School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, GA, USA

Funding source(s)

This work was supported by the Johannes Gutenberg University Center for Computational Sciences, JGU Mainz intramural funding, the Ministry of Justice and for Consumer Safety Rhineland-Palatinate, and the Carl-Zeiss-Foundation.

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