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Bioinformatics workflows | Genomic array data analysis

Birdsuite
Desktop

Birdsuite

A fully open-source set of tools to detect and report SNP genotypes, common…

A fully open-source set of tools to detect and report SNP genotypes, common Copy-Number Polymorphisms (CNPs), and novel, rare, or de novo CNVs in samples processed with the Affymetrix platform. While…

Babelomics
Desktop
Web

Babelomics

A web application for the functional analysis of gene expression and genomic…

A web application for the functional analysis of gene expression and genomic data. Babelomics offers user-friendly access to a full range of methods that cover: (i) primary data analysis, (ii) a…

rCGH
Desktop

rCGH

A comprehensive array-based comparative genomic hybridization analysis…

A comprehensive array-based comparative genomic hybridization analysis workflow, integrating computational improvements and functionalities specifically designed for precision medicine. rCGH ensures…

dChip
Desktop

dChip DNA-Chip Analyzer

Allows analysis of Affymetrix gene expression microarrays and single nucleotide…

Allows analysis of Affymetrix gene expression microarrays and single nucleotide polymorphism (SNP) microarrays. dChip is a microarray analysis software accessible to both biologists and data analysts…

CAPweb
Web

CAPweb CGH-Array Analysis Platform

Allows to store, analyse and manage data. CAPweb is a web tool, for…

Allows to store, analyse and manage data. CAPweb is a web tool, for bioinformatics analysis of comparative genomic hybridization (CGH) arrays. The software combines array normalization, quality…

waviCGH
Web

waviCGH

A versatile web server for the analysis and comparison of genomic copy number…

A versatile web server for the analysis and comparison of genomic copy number alterations in multiple samples from any species. waviCGH processes data generated by high density SNP-arrays, array-CGH…

Asterias
Web

Asterias

An open-source, web-based, suite for the analysis of gene expression and aCGH…

An open-source, web-based, suite for the analysis of gene expression and aCGH data. Asterias implements validated statistical methods, and most of the applications use parallel computing, which…

cghRA
Desktop

cghRA Comparative Genomic Hybridization R Analysis

Permits to conduct comparative genomic hybridization (CGH) array analysis.…

Permits to conduct comparative genomic hybridization (CGH) array analysis. cghRA is based on a mixture of normal distributions, as several other algorithms. It extends many Rgb classes and is fully…

argyle
Desktop

argyle

Allows to import, QC and analysis of Illumina Infinium genotyping arrays.…

Allows to import, QC and analysis of Illumina Infinium genotyping arrays. Argyle serves to provide tools for non-expert users to perform quality checks and exploratory analyses of genotyping data. It…

GeNNet
Desktop

GeNNet

Unifies scientific workflows with graph databases for selecting relevant genes…

Unifies scientific workflows with graph databases for selecting relevant genes according to the evaluated biological systems. GeNNet is an integrated transcriptome analysis platform that includes…

AffyPipe
Desktop

AffyPipe

Automatizes Affymetrix's standard and "best practice" genotyping…

Automatizes Affymetrix's standard and "best practice" genotyping workflows. AffyPipe is a pipeline that addresses the need to automate the whole workflow and hence reduce the time,…

Mat-aCGH
Desktop

Mat-aCGH

An application toolbox for analysis and visualization of microarray-comparative…

An application toolbox for analysis and visualization of microarray-comparative genomic hybridization (array-CGH or aCGH) data which is based on Matlab. Full process of aCGH analysis, from denoising…

Aroma.affymetri…
Desktop

Aroma.affymetrix

A package to analyze small to extremely large Affymetrix datasets.…

A package to analyze small to extremely large Affymetrix datasets. Aroma.affymetrix allows to analyze any number of arrays of various chip types, e.g. 10,000s of expression arrays, SNP chips, exon…

CGH Fusion
Desktop

CGH Fusion

Software for DNA Copy Number and LOH analysis designed with high-throughput…

Software for DNA Copy Number and LOH analysis designed with high-throughput diagnostic laboratories in mind.

oneClickCGH
Desktop

oneClickCGH

A platform-independent array Copy Number analysis software that provides…

A platform-independent array Copy Number analysis software that provides straightforward yet comprehensive detection and reporting of copy number changes.

SNP &…
Desktop

SNP & Variation Suite

An integrated collection of user-friendly, yet powerful analytic tools for…

An integrated collection of user-friendly, yet powerful analytic tools for managing, analyzing, and visualizing multifaceted genomic and phenotypic data.

G T A T C G C T A
Array Studio
Desktop

Array Studio

Provides the premier enterprise solution for data content, framework and…

Provides the premier enterprise solution for data content, framework and graphical user interface for omic and next-generation sequencing data analysis. Array Suite (Array Studio and Array Server)…

GeneSpring GX
Desktop

GeneSpring GX

Provides powerful, accessible statistical tools for fast visualization and…

Provides powerful, accessible statistical tools for fast visualization and analysis of microarrays - expression arrays, miRNA, exon arrays and genomics copy number data.

GenomeStudio
Desktop

GenomeStudio

Visualize and analyze data generated on Illumina array platforms. GenomeStudio…

Visualize and analyze data generated on Illumina array platforms. GenomeStudio supports the primary analysis of microarray data. Performance-optimized tools and a user-friendly graphical interface…

Genedata…
Desktop

Genedata Expressionist

A comprehensive, enterprise software solution that manages, analyzes, and…

A comprehensive, enterprise software solution that manages, analyzes, and visualizes massive amounts of raw data from next-generation sequencing, microarray and other genomic technologies.

Genotyping…
Desktop

Genotyping Console Software

Integrates single nucleotide polymorphism (SNP) genotyping, copy number…

Integrates single nucleotide polymorphism (SNP) genotyping, copy number polymorphism (CNP) genotyping, rare copy number variation (CNV) identification, and cytogenetic analyses into one application.

CytoSure…
Desktop

CytoSure Interpret Software

A powerful and easy-to-use package for the analysis of aCGH data, offering an…

A powerful and easy-to-use package for the analysis of aCGH data, offering an impressive combination of features.

Agilent…
Desktop

Agilent CytoGenomics software

A complete CGH and CGH+SNP microarray data analysis and data reporting solution…

A complete CGH and CGH+SNP microarray data analysis and data reporting solution to streamline the day-to-day cytogenetic sample analysis research workflow.

Agilent…
Desktop

Agilent Genomic Workbench

A comprehensive design and analysis tool for setting up and interpreting your…

A comprehensive design and analysis tool for setting up and interpreting your microarray experiments.

aCGHtool
Desktop

aCGHtool

A tool for the normalization, visualization, breakpoint detection, and…

A tool for the normalization, visualization, breakpoint detection, and comparative analysis of array-CGH data which allows the accurate and sensitive detection of CNAs.

AccuTyping
Desktop

AccuTyping

Provides a method for processing micro-arrays data. AccuTyping is a standalone…

Provides a method for processing micro-arrays data. AccuTyping is a standalone software which gathers algorithms for performing channel normalization, low-signal filtering, background subtraction and…

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