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AllegroGraph specifications


Unique identifier OMICS_18616
Name AllegroGraph
Software type Framework/Library
Interface Command line interface
Restrictions to use License purchase required
Operating system Unix/Linux
Computer skills Advanced
Version 6.2.1
Stability Stable
Maintained Yes


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  • person_outline AllegroGraph Team <>

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AllegroGraph in publications

PMCID: 4504081
PMID: 26185615
DOI: 10.1186/s13326-015-0029-x

[…] contains supplementary material, which is available to authorized users., new biomedical data is increasingly housed in resource description framework (rdf) triple stores such as virtuoso [] and allegrograph [], annotated using rich ontology schemas and queried using an rdf query language called sparql []. the rdf data model has the advantage of making the relationships between the data […]

PMCID: 3654710
PMID: 23595662
DOI: 10.1093/bioinformatics/btt141

[…] (ecmascript 5th ed.), and run using nodejs ( all source code was kept under revision control, and is available at, rdf triples were stored in an allegrograph 4.9 database (by franz inc.), which was interacted with using sparql 1.1 over the http interface provided. this database is publicly available for read access and sparql queries […]

PMCID: 3337266
PMID: 22541597
DOI: 10.1186/2041-1480-3-S1-S6

[…] it possible to take advantage of the growing collection of tools built on this standard to conduct analysis of the data. loading the rdf exported from gene wiki+ into a triplestore such as jena, allegrograph, or openlink virtuoso makes it possible to execute sparql queries, to integrate the data with other rdf resources, and to take advantage of semantic web reasoning systems. (sparql […]

PMCID: 3303732
PMID: 22536974
DOI: 10.1186/1471-2105-13-S4-S7

[…] point to quickly create customized, domain-specific mappings., relational to rdf mapping software exists both as independent tools (e.g.: d2rq and triplify), or as part of a larger suite (e.g. allegrograph, sesame, owlim, virtuoso). in general, they are components of a wider range of software solutions which can expose rdf entities and relations in structured information resources. a list […]

PMCID: 3044316
PMID: 21342591
DOI: 10.1186/1471-2105-12-S1-S8

[…] for protein, complex, mrna, and smallmolecule, if a degradation process is not presented, a unknown degradation process is added., in order to implement the proposed rule-based system, we used allegrograph 3.1 [] for the cso data storage and query engine. allegrograph is an rdf (resource description framework) graph database with support for sparql (sparql protocol and rdf query language) […]

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