Unlock your biological data

?

Try: RNA sequencing CRISPR Genomic databases DESeq

1 - 3 of 3 results
filter_list Filters
language Programming Language
settings_input_component Operating System
tv Interface
computer Computer Skill
copyright License
1 - 3 of 3 results
amrfinder
A probabilistic model to infer allele-specific DNA methylation (ASM) based on data from high-throughput BS-seq experiments. This model is independent of genotype, and therefore has broad applicability to identify ASM in the context of imprinting. In essence, this model describes the degree to which methylation states in reads appear to reflect two distinct patterns, each pattern representing roughly half the data. This method only requires formatted mapped reads (Epiread format) as input, and reports all possible regions of ASM in the genome. amrfinder is a part of the MethPipe Package. Please see the MethPipe homepage for installation details.
SMAP / Streamlined Methylation Analysis Pipeline
Allows to extract multiple types of information (such as DMCs, DMRs, SNPs and ASM) from various types of RRBS and Bis-seq data. SMAP is designed to be an easy-to-use, one-stop and sophisticated package for methylation analyses. The pipeline consists of seven operational stages: (i) reference preparation, (ii) read preparation, (iii) alignment, (iv) calculation of methylation rate, (v) differentially methylated regions (DMR) detection, (vi) single nucleotide polymorphism (SNP) and allele-specific DNA methylation (ASM) calling and (vii) summarization.
0 - 0 of 0 results
1 - 2 of 2 results
filter_list Filters
computer Job seeker
Disable 1
person Position
thumb_up Fields of Interest
public Country
language Programming Language
1 - 2 of 2 results

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.