Allele workbench specifications


Unique identifier OMICS_07010
Name Allele workbench
Software type Pipeline/Workflow
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes


No version available


  • person_outline Carol Soderlund

Publication for Allele workbench

Allele workbench citation


IDP ASE: haplotyping and quantifying allele specific expression at the gene and gene isoform level by hybrid sequencing

Nucleic Acids Res
PMCID: 5952581
PMID: 27899656
DOI: 10.1093/nar/gkw1076

[…] ly known SNVs (). A number of bioinformatics tools based on high-throughput Second Generation Sequencing (SGS) data have been developed, such as AlleleSeq (), MMSEQ (), asSeq (), Allim (), MBASED (), Allele Workbench (), QuASAR (), ASEQ (), EMASE () and others (,,). However, either available phased genotypes (e.g. MMSEQ, asSeq and EMASE) or family trio data (e.g. AlleleSeq and Allim) are required […]

Allele workbench institution(s)
BIO5 Institute, University of Arizona, Tucson, AZ, USA; iPlant Collaborative, University of Arizona, Tucson, AZ, USA
Allele workbench funding source(s)
Supported by National Science Foundation grants DBI-1265383 (PI SAG) and IOS-1248090 (PI SAG).

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