AlleleID pipeline

AlleleID specifications


Unique identifier OMICS_15902
Name AlleleID
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Mac OS, Windows
Computer skills Medium
Stability Stable
Maintained Yes



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  • person_outline Beacon Designer Team <>

AlleleID IN pipelines

PMCID: 5859231
PMID: 29593755
DOI: 10.3389/fpls.2018.00283

[…] the seven senna species and were thus selected for subsequent hrm analysis. conserved regions flanking the variable sites were identified visually and hrm-suited potential primers were designed with alleleid (v.7.7, premier biosoft international, palo alto, ca, united states) using its sybr green design function. the target amplification was set between 100 and 250 bases and primer length […]

PMCID: 3589332
PMID: 23472178
DOI: 10.1371/journal.pone.0058316

[…] sequence data obtained from genbank were aligned using bioedit [15] and a number of sets of putatively species-specific pcr markers were designed in silico using the computer software package alleleid (premier biosoft, inc.) or the primer-blast function in genbank (, candidate primer sets were screened for positive amplification […]

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