AlleleSeq specifications


Unique identifier OMICS_05503
Name AlleleSeq
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Joel Rozowsky <>

AlleleSeq article

AlleleSeq citation

PMCID: 5685192

[…] include only uniquely mapped and properly paired reads contained within exon boundaries., for the four single-cell samples and for gtex-upic rna-seq data was processed using a modification of the alleleseq pipeline36,37 to minimize reference allele bias in alignment. a diploid personal reference genome for each of the samples was generated with the vcf2diploid tool36 including […]

AlleleSeq institution(s)
Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA

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