AllelicImbalance specifications

Information


Unique identifier OMICS_08963
Name AllelicImbalance
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.18.0
Stability Stable
Requirements
AnnotationDbi, methods, grid, BiocGenerics, testthat, GenomeInfoDb, BiocStyle, lattice, Gviz, rmarkdown, knitr, S4Vectors(>=0.17.25), IRanges(>=2.13.12), BSgenome(>=1.47.3), org.Hs.eg.db, latticeExtra, nlme, Biostrings(>=2.47.6), GenomicRanges(>=1.31.8), seqinr, TxDb.Hsapiens.UCSC.hg19.knownGene, gridExtra, Rsamtools(>=1.31.2), GenomicFeatures(>=1.31.3), R(>=3.2.0), SummarizedExperiment(>=0.2.0), GenomicAlignments(>=1.15.6), VariantAnnotation(>=1.25.11), SNPlocs.Hsapiens.dbSNP144.GRCh37
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Jesper R. G├ądin

Publication for AllelicImbalance

AllelicImbalance institution(s)
Atherosclerosis Research Unit, Karolinska University Hospital Solna, Center for Molecular Medicine, Bldg, Stockholm, Sweden; Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark
AllelicImbalance funding source(s)
Supported by the Swedish Research Council (12660) and the Swedish Heart-Lung Foundation.

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