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- person_outline Yasunori Yamamoto
Publication for Allie
NeuroRDF: semantic integration of highly curated data to prioritize biomarker candidates in Alzheimer's disease
[…] ] and the semantic search engine SCAIView . Identification of genes/proteins and disease mentions was accomplished using dictionaries. The disease dictionary was built using MeSH , MedDRA , and Allie  databases. Currently, it contains 4,729 concepts and 64,776 synonyms , which are normalized to MeSH names. Human Genes/Proteins dictionary  was compiled from three different resources: Sw […]
Building Linked Open Data towards integration of biomedical scientific literature with DBpedia
[…] at it utilises well-known open standards, such as the Resource Description Framework (RDF)  or Hypertext Transfer Protocol (HTTP). Within this context, we decided to make our abbreviation database, Allie, downloadable in RDF format. The Allie database stores life science abbreviations and their long forms (LFs, or expanded forms) . We have been providing a Web interface to lookup the candidate […]
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*
[…] bbreviation searching, as can be seen in services like Whatizit  and TerMine . There are also databases of text-mined information that provide web service APIs such as iHOP , BioCreative  and Allie . UIMA itself provides a SOAP interface available for any UIMA component. While BioNLP tools seem to be readily linked with other bioinformatics web services, the raw data generated by several […]
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