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Allie specifications


Unique identifier OMICS_07932
Name Allie
Restrictions to use None
Content license CC Attribution
Maintained Yes


  • person_outline Yasunori Yamamoto

Publication for Allie

Allie citations


NeuroRDF: semantic integration of highly curated data to prioritize biomarker candidates in Alzheimer's disease

J Biomed Semantics
PMCID: 4939021
PMID: 27392431
DOI: 10.1186/s13326-016-0079-8

[…] ] and the semantic search engine SCAIView []. Identification of genes/proteins and disease mentions was accomplished using dictionaries. The disease dictionary was built using MeSH [], MedDRA [], and Allie [] databases. Currently, it contains 4,729 concepts and 64,776 synonyms [], which are normalized to MeSH names. Human Genes/Proteins dictionary [] was compiled from three different resources: Sw […]


Building Linked Open Data towards integration of biomedical scientific literature with DBpedia

J Biomed Semantics
PMCID: 3621846
PMID: 23497538
DOI: 10.1186/2041-1480-4-8

[…] at it utilises well-known open standards, such as the Resource Description Framework (RDF) [] or Hypertext Transfer Protocol (HTTP). Within this context, we decided to make our abbreviation database, Allie, downloadable in RDF format. The Allie database stores life science abbreviations and their long forms (LFs, or expanded forms) []. We have been providing a Web interface to lookup the candidate […]


The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*

J Biomed Semantics
PMCID: 2939597
PMID: 20727200
DOI: 10.1186/2041-1480-1-8

[…] bbreviation searching, as can be seen in services like Whatizit [] and TerMine []. There are also databases of text-mined information that provide web service APIs such as iHOP [], BioCreative [] and Allie []. UIMA itself provides a SOAP interface available for any UIMA component. While BioNLP tools seem to be readily linked with other bioinformatics web services, the raw data generated by several […]


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Allie institution(s)
Database Center for Life Science, Bunkyo-ku, Tokyo and Department of Computational Biology, University of Tokyo, Kashiwa, Chiba, Japan

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