ALLMAPS protocols

ALLMAPS specifications

Information


Unique identifier OMICS_07415
Name ALLMAPS
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


Add your version

Documentation


Maintainer


  • person_outline Haibao Tang <>

Information


Unique identifier OMICS_07415
Name ALLMAPS
Interface Web user interface
Restrictions to use None
Programming languages Python
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Haibao Tang <>

Publication for ALLMAPS

ALLMAPS IN pipelines

 (2)
2017
PMCID: 5240624
PMID: 28094805
DOI: 10.1038/srep40728

[…] proteins from the two species. we identified gene pairs that we were able to use for anchoring. the final pseudomolecule assembly was generated from the genetic map and synteny evidence using allmaps64, where higher weighting was given to evidence from the genetic map. the macrosynteny between b. vulgaris and a. lyrata was compared by anchoring the genetic markers to the a. lyrata genome […]

2017
PMCID: 5432662
PMID: 28540183
DOI: 10.1016/j.gdata.2017.05.007

[…] assembled de novo using newbler software. genes were predicted by fgenesh and annotated using blastx against the ncbi non-redundant protein database. we used symap for pairwise synteny mapping and allmaps to integrate our draft genome with a rad-snp-based genetic map of c. olitorius. consent n/a sample source location barrackpore, kolkata, india (22°46′2.7372″ n 88°23′18.0384″ e) , […]

ALLMAPS institution(s)
Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian Province, China; School of Plant Sciences, iPlant Collaborative, University of Arizona, Tucson, AZ, USA, IA, USA; J Craig Venter Institute, Chinakville, MD, USA; Department of Agronomy and Horticulture, University of Nebraska, Lincoln, NE, USA, Ames, IA, USA; Department of Agronomy, Iowa State University, Ames, IA, USA; Heilongjiang River Fisheries Research Institute, Harbin, China

ALLMAPS reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review ALLMAPS