HomeoRoq / Homeolog Ratio and Quantification
Quantifies the contribution of gene expression of each homeolog. HomeoRoq can detect changes in the ratios of the expression of homeologs under different conditions using RNA-seq data obtained from synthetic allopolyploid species. The software works with draft genomes or gene sequences assembled using a RNA-seq assembler. It does not need prior single nucleotide polymorphism (SNP) analysis between parental species.