AlloPred statistics

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Citations per year

Number of citations per year for the bioinformatics software tool AlloPred
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AlloPred specifications

Information


Unique identifier OMICS_10323
Name AlloPred
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data PDB ID and chain(s) or PDB file
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Requirements
Python, Numpy, Prody, fpocket, SVM-light
Maintained Yes

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Versioning


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Maintainer


  • person_outline Joe G. Greener

Information


Unique identifier OMICS_10323
Name AlloPred
Interface Web user interface
Restrictions to use None
Input data PDB ID and chain(s) or PDB file
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Joe G. Greener

Publication for AlloPred

AlloPred citations

 (2)
library_books

A computational study for rational HIV 1 non nucleoside reverse transcriptase inhibitor selection and the discovery of novel allosteric pockets for inhibitor design

2018
Biosci Rep
PMCID: 5835713
PMID: 29437904
DOI: 10.1042/BSR20171113

[…] ond overall and had the highest ‘druggability’ score in the top five identified pockets (see Supplementary Figure S1). We then independently performed allosteric pocket prediction for PDB:3T19 on the AlloPred server [] (refer to Greener and Sternberg [] for more details), and found that four out of five identified pockets above were predicted to be ‘allosteric’ (with the known NNRTI-binding pocket […]

library_books

Predicting Protein Dynamics and Allostery Using Multi Protein Atomic Distance Constraints

2017
PMCID: 5343748
PMID: 28190781
DOI: 10.1016/j.str.2017.01.008

[…] TEcs allosteric pockets defined previously. PARS results are obtained by using the PARS web server (). PARS uses LIGSITEcs, so the same criterion as LIGSITEcs is used to determine allosteric pockets. AlloPred is run using the offline version () and default parameters. The active-site residues are retrieved from the Catalytic Site Atlas (CSA) (), or from literature inspection when not available in […]


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AlloPred institution(s)
Centre for Integrative Systems Biology and Bioinformatics, Department of Life Sciences, Imperial College London, London, UK

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