ALOHA statistics

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Citations per year

Number of citations per year for the bioinformatics software tool ALOHA
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Tool usage distribution map

This map represents all the scientific publications referring to ALOHA per scientific context
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ALOHA specifications

Information


Unique identifier OMICS_22635
Name ALOHA
Alternative name Allele-frequency/Loss-Of-Heterozygosity/Allele-imbalance
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Version 1.2
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Hsin-Chou Yang

Publication for Allele-frequency/Loss-Of-Heterozygosity/Allele-imbalance

ALOHA citations

 (2)
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Integrative analysis of single nucleotide polymorphisms and gene expression efficiently distinguishes samples from closely related ethnic populations

2012
BMC Genomics
PMCID: 3453505
PMID: 22839760
DOI: 10.1186/1471-2164-13-346

[…] upervised classification analysis was performed by drawing allele frequency biplots and gene expression biplots based on genome-wide SNP and GE markers, respectively. The analysis was performed using ALOHA software [], which is available on the ALOHA website (http://www.stat.sinica.edu.tw/hsinchou/genetics/aloha/ALOHA.htm). Afterward, intensive supervised classification analyses were performed to […]

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SAQC: SNP Array Quality Control

2011
BMC Bioinformatics
PMCID: 3101186
PMID: 21501472
DOI: 10.1186/1471-2105-12-100

[…] e due to polyploidy or aneuploidy can be easily identified via an intensity-based AF plot (Additional file ). In addition, SAQC software can be used jointly with our recently developed analysis tool, ALOHA software [], to identify regions of chromosomal aberrations, such as allelic imbalance, loss of heterozygosity and copy number changes. Although our quality index is not designed for directly de […]


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ALOHA institution(s)
Institute of Statistical Science, Academia Sinica, Taipei, Taiwan; Institute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan
ALOHA funding source(s)
Supported by a grant from the National Science Council of Taiwan (NSC 97-2314-B-001-006-MY3) and the National Research Program for Genomic Medicine (NSC 97-3112-B-001-027 and NSC 97-3112- B-001-013).

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