ALOHA statistics

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Citations per year

Number of citations per year for the bioinformatics software tool ALOHA

Tool usage distribution map

This map represents all the scientific publications referring to ALOHA per scientific context
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ALOHA specifications


Unique identifier OMICS_22635
Alternative name Allele-frequency/Loss-Of-Heterozygosity/Allele-imbalance
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Version 1.2
Stability Stable
Maintained Yes




No version available



  • person_outline Hsin-Chou Yang

Publication for Allele-frequency/Loss-Of-Heterozygosity/Allele-imbalance

ALOHA citations


Integrative analysis of single nucleotide polymorphisms and gene expression efficiently distinguishes samples from closely related ethnic populations

BMC Genomics
PMCID: 3453505
PMID: 22839760
DOI: 10.1186/1471-2164-13-346

[…] upervised classification analysis was performed by drawing allele frequency biplots and gene expression biplots based on genome-wide SNP and GE markers, respectively. The analysis was performed using ALOHA software [], which is available on the ALOHA website ( Afterward, intensive supervised classification analyses were performed to […]


SAQC: SNP Array Quality Control

BMC Bioinformatics
PMCID: 3101186
PMID: 21501472
DOI: 10.1186/1471-2105-12-100

[…] e due to polyploidy or aneuploidy can be easily identified via an intensity-based AF plot (Additional file ). In addition, SAQC software can be used jointly with our recently developed analysis tool, ALOHA software [], to identify regions of chromosomal aberrations, such as allelic imbalance, loss of heterozygosity and copy number changes. Although our quality index is not designed for directly de […]

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ALOHA institution(s)
Institute of Statistical Science, Academia Sinica, Taipei, Taiwan; Institute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan
ALOHA funding source(s)
Supported by a grant from the National Science Council of Taiwan (NSC 97-2314-B-001-006-MY3) and the National Research Program for Genomic Medicine (NSC 97-3112-B-001-027 and NSC 97-3112- B-001-013).

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