ALOHOMORA statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool ALOHOMORA
info

Tool usage distribution map

This map represents all the scientific publications referring to ALOHOMORA per scientific context
info info

Associated diseases

This word cloud represents ALOHOMORA usage per disease context
info

Popular tool citations

chevron_left Linkage analysis chevron_right
Want to access the full stats & trends on this tool?

Protocols

ALOHOMORA specifications

Information


Unique identifier OMICS_22170
Name ALOHOMORA
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Input data Some genotype data.
Operating system Unix/Linux, Windows
Programming languages Perl
Computer skills Medium
Version 0.33
Stability Stable
Maintained Yes

Download


download.png
download.png
download.png

Versioning


No version available

Maintainer


  • person_outline Franz Ruschendorf

Publication for ALOHOMORA

ALOHOMORA citations

 (17)
call_split

A deep intronic CLRN1 (USH3A) founder mutation generates an aberrant exon and underlies severe Usher syndrome on the Arabian Peninsula

2017
Sci Rep
PMCID: 5431179
PMID: 28469144
DOI: 10.1038/s41598-017-01577-8
call_split See protocol

[…] inkage using the Infinium CoreExome-24 v1.1 BeadChip (Illumina Inc., San Diego, CA) according to the manufacturer’s protocol. Subsequent data handling was performed using the graphical user interface ALOHOMORA. Relationship errors were identified by using the program Graphical Relationship Representation. The program PedCheck was applied to find Mendelian errors and data for SNPs with such errors […]

call_split

Retinoic acid catabolizing enzyme CYP26C1 is a genetic modifier in SHOX deficiency

2016
PMCID: 5167135
PMID: 27861128
DOI: 10.15252/emmm.201606623
call_split See protocol

[…] e frequency of 0.0001. Haplotypes were reconstructed with ALLEGRO and presented graphically with HaploPainter (Thiele & Nürnberg, ). All data handling was performed using the graphical user interface ALOHOMORA (Rüschendorf & Nürnberg, ). Using ALLEGRO, we identified one genomic region of 19.2 Mb on chromosome 10 (chr10:85477508‐101462931; hg19) with LOD score of 2.4 (Figs  and ). The LOD score obt […]

call_split

The Role of a Novel TRMT1 Gene Mutation and Rare GRM1 Gene Defect in Intellectual Disability in Two Azeri Families

2015
PLoS One
PMCID: 4550366
PMID: 26308914
DOI: 10.1371/journal.pone.0129631
call_split See protocol

[…] (Affymetrix, Santa Clara, CA, USA) for two or three affected individuals, one unaffected individual and their parents, and the data were analysed using Homozygosity Mapper software[,]. We applied the ALOHOMORA [] software v0.32 which use for converting genotyping data into appropriate format for linkage analysis. The gender-check tool of the ALOHOMORA software was also used to check the gender of […]

library_books

A hypomorphic BMPR1B mutation causes du Pan acromesomelic dysplasia

2015
Orphanet J Rare Dis
PMCID: 4482310
PMID: 26105076
DOI: 10.1186/s13023-015-0299-5

[…] nd haplotype reconstruction were performed using the program ALLEGRO []. Haplotypes were presented graphically with HaploPainter []. All data handling was performed using the graphical user interface ALOHOMORA []. […]

call_split

Mutations in CDK5RAP2 cause Seckel syndrome

2015
PMCID: 4585455
PMID: 26436113
DOI: 10.1002/mgg3.158
call_split See protocol

[…] udbjartsson et al. ). Haplotypes were reconstructed with ALLEGRO and presented graphically with HaploPainter (Thiele and Nürnberg ). All data handling was performed using the graphical user interface ALOHOMORA (Ruschendorf and Nürnberg ). […]

library_books

OSBPL2 encodes a protein of inner and outer hair cell stereocilia and is mutated in autosomal dominant hearing loss (DFNA67)

2015
Orphanet J Rare Dis
PMCID: 4334766
PMID: 25759012
DOI: 10.1186/s13023-015-0238-5

[…] calculated using the program ALLEGRO []. Haplotypes were reconstructed with ALLEGRO and presented graphically with HaploPainter []. All data handling was performed using the graphical user interface ALOHOMORA [].Following the identification of the causative mutation in OSBPL2, DFNA67 was assigned as a novel locus designation for ADNSHL by the Human Gene Nomenclature Committee, HGNC. […]


Want to access the full list of citations?
ALOHOMORA institution(s)
Bioinformatics Department, Max Delbrück Center (MDC) for Molecular Medicine, Berlin-Buch, Germany; Gene Mapping Center, Max Delbrück Center (MDC) for Molecular Medicine, Berlin-Buch, Germany; Cologne Center for Genomics, University of Cologne, Cologne, Germany
ALOHOMORA funding source(s)
Supported by the Federal Ministry of Science and Education of Germany through the National Genome Research Network.

ALOHOMORA reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review ALOHOMORA