ALOHOMORA statistics

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Associated diseases

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ALOHOMORA specifications

Information


Unique identifier OMICS_22170
Name ALOHOMORA
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Input data Some genotype data.
Operating system Unix/Linux, Windows
Programming languages Perl
Computer skills Medium
Version 0.33
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Franz Ruschendorf <>

Publication for ALOHOMORA

ALOHOMORA in publications

 (20)
PMCID: 5431179
PMID: 28469144
DOI: 10.1038/s41598-017-01577-8

[…] using the infinium coreexome-24 v1.1 beadchip (illumina inc., san diego, ca) according to the manufacturer’s protocol. subsequent data handling was performed using the graphical user interface alohomora. relationship errors were identified by using the program graphical relationship representation. the program pedcheck was applied to find mendelian errors and data for snps with such errors […]

PMCID: 5167135
PMID: 27861128
DOI: 10.15252/emmm.201606623

[…] of 0.0001. haplotypes were reconstructed with allegro and presented graphically with haplopainter (thiele & nürnberg, ). all data handling was performed using the graphical user interface alohomora (rüschendorf & nürnberg, ). using allegro, we identified one genomic region of 19.2 mb on chromosome 10 (chr10:85477508‐101462931; hg19) with lod score of 2.4 (figs  and ). the lod […]

PMCID: 4550366
PMID: 26308914
DOI: 10.1371/journal.pone.0129631

[…] santa clara, ca, usa) for two or three affected individuals, one unaffected individual and their parents, and the data were analysed using homozygosity mapper software[,]. we applied the alohomora [] software v0.32 which use for converting genotyping data into appropriate format for linkage analysis. the gender-check tool of the alohomora software was also used to check the gender […]

PMCID: 4482310
PMID: 26105076
DOI: 10.1186/s13023-015-0299-5

[…] haplotype reconstruction were performed using the program allegro []. haplotypes were presented graphically with haplopainter []. all data handling was performed using the graphical user interface alohomora []., the bmpr1b substitutions arg31cys (identified here) and arg31his (present at low frequency in public databases; rs200035802) were modeled on the basis of the crystal structure […]

PMCID: 4585455
PMID: 26436113
DOI: 10.1002/mgg3.158

[…] et al. ). haplotypes were reconstructed with allegro and presented graphically with haplopainter (thiele and nürnberg ). all data handling was performed using the graphical user interface alohomora (ruschendorf and nürnberg )., we identified candidate genes in the critical region using the ensembl (http://www.ensembl.org) and ucsc (http://www.genome.ucsc.edu) human genome databases. […]


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ALOHOMORA institution(s)
Bioinformatics Department, Max Delbrück Center (MDC) for Molecular Medicine, Berlin-Buch, Germany; Gene Mapping Center, Max Delbrück Center (MDC) for Molecular Medicine, Berlin-Buch, Germany; Cologne Center for Genomics, University of Cologne, Cologne, Germany
ALOHOMORA funding source(s)
Supported by the Federal Ministry of Science and Education of Germany through the National Genome Research Network.

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