Alpha-CENTAURI specifications

Unique identifier:
OMICS_11435
Software type:
Pipeline/Workflow
Restrictions to use:
None
Output data:
HOR predictions
Operating system:
Unix/Linux
Version:
0.2
Requirements:
g++ compiler, Python, Python-dev, git, Python pip, virtualenv
Name:
ALPHA satellite CENTromeric AUtomated Repeat Identification
Interface:
Command line interface
Input data:
Alpha-CENTAURI takes two input files: a FASTA file containing long reads and an HMM database built using known alpha-satellite monomers. The HMM database is used to infer monomeric sequences in each read.
Biological technology:
Pacific Biosciences
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

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Alpha-CENTAURI support

Documentation

Maintainer

  • Ali Bashir <>

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Publications

Institution(s)

Pacific Biosciences, Inc., CA, USA; Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA; Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, NY, USA; Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA, USA

Funding source(s)

Supported in part through the computational resources and staff expertise provided by the Department of Scientific Computing at the Icahn School of Medicine at Mount Sinai.

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