ALPHABETR specifications

Information


Unique identifier OMICS_15215
Name ALPHABETR
Alternative name ALgorithm for Pairing alPHA-BETa T cell Receptors
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A list of unpaired sequences associated with the sample.
Output data A list of single and dual TCRα clones, each with their estimated frequency within the parent population.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.2.1
Stability Stable
Requirements
Rcpp, clue, dplyr, multicool
Maintained Yes

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Documentation


Maintainer


  • person_outline Andrew Yates <>

Publication for ALgorithm for Pairing alPHA-BETa T cell Receptors

ALPHABETR institution(s)
Institute of Infection, Immunity & Inflammation, Glasgow Biomedical Research Centre, University of Glasgow, Glasgow, UK; St Jude Children's Research Hospital, Memphis, TN, USA; Karolinska Institute, CMB, Stockholm, Sweden
ALPHABETR funding source(s)
This study was supported by Arthritis Research UK and the NIH (R01 AI 093870).

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