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AlphaPeel

Calls, phases, and imputes genotype and sequence data in pedigree populations. AlphaPeel implements hybrid peeling, a computationally tractable multi-locus peeling algorithm for whole genome sequence data, as well as locus and multi locus peeling. This program uses pedigree-based information to call and impute low coverage sequence data in very large populations.

AlphaPeel specifications

Desktop

Information

Unique identifier	OMICS_33133
Name	AlphaPeel
Software type	Application/Script
Interface	Command line interface
Restrictions to use	Academic or non-commercial use
Operating system	Unix/Linux, Mac OS, Windows
Computer skills	Advanced
Version	0.1.0
Stability	Beta
Maintained	Yes

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Versioning

No version available

Documentation

Documentation: http://www.alphagenes.roslin.ed.ac.uk/wp-content/uploads/alphasuite/alphapeel/AlphaPeelDocs.pdf

Maintainers

John Hickey
Andrew Whalen

Publication for AlphaPeel

Hybrid peeling for fast and accurate calling, phasing, and imputation with sequence data of any coverage in pedigrees.

2017 BioRxiv

DOI: 10.1101/228999

AlphaPeel institution(s)

The Roslin Institute and Royal (Dick) School of Veterinary Studies, The University of Edinburgh, Midlothian, UK

AlphaPeel reviews

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