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Alta-Cyclic | A self-optimizing base caller for next-generation sequencing

An Illumina Genome-Analyzer (Solexa) base caller. Alta-Cyclic substantially improved the number of accurate reads for sequencing runs up to 78 bases and reduced systematic biases, facilitating confident identification of sequence variants.

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Alta-Cyclic forum

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Alta-Cyclic classification

Alta-Cyclic specifications

Unique identifier:
OMICS_01149
Interface:
Command line interface
Input format:
INT with Bustard reads
Operating system:
Unix/Linux
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Biological technology:
Illumina
Computer skills:
Advanced
Maintained:
Yes

Alta-Cyclic distribution

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Alta-Cyclic support

Maintainer

  • Yaniv Erlich <>

Credits

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Publications

Institution(s)

Watson School of Biological Sciences, Cold Spring Harbor, NY, USA; Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA

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