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AltAnalyze

An easy-to-use application for microarray, RNA-Seq and metabolomics analysis. For splicing sensitive platforms (RNA-Seq or Affymetrix Exon, Gene and Junction arrays), AltAnalyze will assess alternative exon (known and novel) expression along protein isoforms, domain composition and microRNA targeting. In addition to splicing-sensitive platforms, AltAnalyze provides comprehensive methods for the analysis of other data (RMA summarization, batch-effect removal, QC, statistics, annotation, clustering, network creation, lineage characterization, alternative exon visualization, gene-set enrichment and more).

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AltAnalyze forum

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AltAnalyze classification

AltAnalyze specifications

Software type:
Pipeline/Workflow
Restrictions to use:
None
Output format:
PDF, PNG
Computer skills:
Advanced
Stability:
Stable
Interface:
Command line interface, Graphical user interface
Input format:
FASTQ, BAM, BED, CEL
Operating system:
Unix/Linux, Mac OS, Windows
Version:
2.1.0
Maintained:
Yes

AltAnalyze distribution

versioning

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No versioning.

Credits

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Publications

Institution(s)

Max Planck Institute for Informatics, Saarbrücken, Germany

Link to literature

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