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alteRNA specifications


Unique identifier OMICS_23838
Name alteRNA
Software type Application/Script
Interface Web user interface
Restrictions to use None
Input data A sequence.
Input format FASTA
Output data The predicted RNA structure and the graphics files for the predicted secondary structure.
Output format POSTSCRIPT+GIF
Computer skills Basic
Stability No
Maintained No


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Publications for alteRNA

alteRNA citations


Amphibians and reptiles of C. E. Miller Ranch and the Sierra Vieja, Chihuahuan Desert, Texas, USA

PMCID: 5904337
PMID: 29674864
DOI: 10.3897/zookeys.735.22200

[…] species that occurred in this area in 1948. additionally, at that time, many of these specimens were among the first to be collected for several species (i.e., bogertophis subocularis, lampropeltis alterna, trimorphodon vilkinsonii; )., here we report the results from herpetological surveys conducted from 2004–2017 at the same locality that was sampled in 1948, c. e. miller ranch. we compare […]


Acute physiological and electrical accentuation of vagal tone has no effect on pain or gastrointestinal motility in chronic pancreatitis

PMCID: 5459955
PMID: 28615966
DOI: 10.2147/JPR.S133438

[…] effects of opioids, they may further compromise gastrointestinal (gi) function with diminution of motility., therefore, there is a pressing unmet clinical need for the development of effective alterna-tives, which ameliorate pain and enhance gi motility in cp., normal gi function relies on a bidirectional communication from the gut to the central nervous system, delivered in part […]


Amphibians and reptiles of the state of Chihuahua, Mexico, with comparisons with adjoining states

PMCID: 5396572
PMID: 28435388
DOI: 10.3897/zookeys.658.10665

[…] occur within the state of chihuahua. two of them in southwestern chihuahua (phyllorhynchus browni and pseudoficimia frontalis); four in northeastern chihuahua (coluber constrictor, lampropeltis alterna, pantherophis bairdi, tantilla cucullata); two in the northwestern part of the state (crotalus tigris, sistrurus catenatus); and one in extreme southeastern chihuahua (tantilla atriceps). […]


Effects of Fluoride Varnish on Streptococcus mutans Count in Saliva

PMCID: 5360806
PMID: 28377658
DOI: 10.5005/jp-journals-10005-1409

[…] and it has been suggested that an s. mutans count higher than 105 colony-forming unit cfu/ml of saliva is related to higher caries risk. hence, microbial monitoring has been considered as an alterna-five method for evaluating caries activity., as dental caries has multifactorial etiology, preventive measures usually involve a combination of dietary counseling, oral hygiene measures, […]


Are pit latrines in urban areas of Sub Saharan Africa performing? A review of usage, filling, insects and odour nuisances

PMCID: 4743102
PMID: 26846125
DOI: 10.1186/s12889-016-2772-z

[…] [, ]. currently, in the 21st century, interest in pit latrines is aimed at pit latrine filling and nutrient recovery. for example, two shallow compost pit latrines designs, the arborloo and fossa alterna have been developed [, ]. the importance of hygienic latrines has also been addressed. for example, a study by m jenkins, et al. [] noted that beyond the millennium development goal’s […]


Evaluation of the improved tubeless cutaneous ureterostomy technique following radical cystectomy in cases of invasive bladder cancer complicated by peritoneal metastasis

PMCID: 4734275
PMID: 26893750
DOI: 10.3892/ol.2015.4045

[…] terminal of the ureter was turned inside out and folded. the terminal of the bilateral ureters exhibited a nipple-like shape and protruded 0.5 cm from the skin surface, where a single j stent (4f alterna, coloplast) incubation was performed on both sides., the patients were followed-up and observed for complications related to the surgical procedures, such as stoma infection, nipple atrophy, […]

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alteRNA institution(s)
Lab for Computational Biology, Simon Fraser University, Burnaby, BC, Canada; Department of Genome Sciences, University of Washington, Seattle, WA, USA
alteRNA funding source(s)
Supported by NSERC, Canada Research Chairs Program, Canada Foundation for Innovation and Michael Smith Foundation for Health Research.

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