ASIP specifications

Unique identifier:
Web user interface
Input data:
Some genome sequences.
Output data:
List and annotation of alternatively spliced genes; Intron, exon, and junction sequences; Raw GeneSeqer alignment, MySQL database dump.
Programming languages:
Alternative Splicing in Plants
Restrictions to use:
Input format:
Output format:
Computer skills:
  • Plants
    • Arabidopsis thaliana
    • Glycine max
    • Hordeum vulgare
    • Medicago truncatula
    • Oryza sativa
    • Populus trichocarpa
    • Triticum aestivum
    • Vitis vinifera


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ASIP support


This tool is not maintained anymore.


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Department of Plant Pathology, University of Minnesota, St. Paul, MN, USA; Department of Genetics, Development and Cell Biology and Department of Statistics, Iowa State University, Ames, IA, USA; Pioneer Hi-Bred International, Johnston, IA, USA

Funding source(s)

Supported by National Science Foundation grants DBI-0321460 and DBI-0606966, NSF grant DBI-0606909.

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