ASIP specifications

Information


Unique identifier OMICS_18340
Name Alternative Splicing in Plants
Interface Web user interface
Restrictions to use None
Input data Some genome sequences.
Input format FASTA
Output data List and annotation of alternatively spliced genes; Intron, exon, and junction sequences; Raw GeneSeqer alignment, MySQL database dump.
Output format TXT
Programming languages Perl
Computer skills Basic
Stability Stable

Taxon


  • Plants
    • Arabidopsis thaliana
    • Glycine max
    • Hordeum vulgare
    • Medicago truncatula
    • Oryza sativa
    • Populus trichocarpa
    • Triticum aestivum
    • Vitis vinifera

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ASIP article

ASIP institution(s)
Department of Plant Pathology, University of Minnesota, St. Paul, MN, USA; Department of Genetics, Development and Cell Biology and Department of Statistics, Iowa State University, Ames, IA, USA; Pioneer Hi-Bred International, Johnston, IA, USA
ASIP funding source(s)
Supported by National Science Foundation grants DBI-0321460 and DBI-0606966, NSF grant DBI-0606909.

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