Altrans specifications

Unique identifier:
OMICS_11335
Interface:
Command line interface
Input data:
It requires a BAM alignment file from an RNA-seq experiment and an annotation file in GTF format detailing the location of the exons in the genome.
License:
GNU General Public License version 3.0
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes

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Altrans support

Documentation

Maintainer

  • Halit Ongen <>

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Publications

Institution(s)

Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland; Institute for Genetics and Genomics in Geneva (iGE3), University of Geneva, Geneva, Switzerland; Swiss Institute of Bioinformatics, Geneva, Switzerland; Center of Excellence for Genomic Medicine Research, King Abdulaziz University, Jeddah, Saudi Arabia; Biomedical Research Foundation Academy of Athens, Athens, Greece

Funding source(s)

This research is supported by grants from European Commission SYSCOL FP7 (UE7-SYSCOL-258236), European Research Council, Louis Jeantet Foundation, Swiss National Science Foundation, and the NIH-NIMH (GTEx).

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