Altrans specifications


Unique identifier OMICS_11335
Name Altrans
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data It requires a BAM alignment file from an RNA-seq experiment and an annotation file in GTF format detailing the location of the exons in the genome.
Operating system Unix/Linux
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Halit Ongen <>

Publication for Altrans

Altrans institution(s)
Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland; Institute for Genetics and Genomics in Geneva (iGE3), University of Geneva, Geneva, Switzerland; Swiss Institute of Bioinformatics, Geneva, Switzerland; Center of Excellence for Genomic Medicine Research, King Abdulaziz University, Jeddah, Saudi Arabia; Biomedical Research Foundation Academy of Athens, Athens, Greece
Altrans funding source(s)
This research is supported by grants from European Commission SYSCOL FP7 (UE7-SYSCOL-258236), European Research Council, Louis Jeantet Foundation, Swiss National Science Foundation, and the NIH-NIMH (GTEx).

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