ALTree specifications


Unique identifier OMICS_13032
Name ALTree
Alternative name Association and Localisation tests using haplotype phylogenetic Trees
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Results of haplotype reconstruction programs
Input format PHASE, FAMHAP
Output data Input file for the phylogeny reconstruction programs, the number of times a given haplotype is carried by case and control individuals
Output format PAUP, PHY, TXT
Operating system Unix/Linux
Programming languages C
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.1.0
Stability Stable
Requirements PAUP, Phylip, PAML, PHYML, perl, gcc, make
Maintained No



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Publication for Association and Localisation tests using haplotype phylogenetic Trees

ALTree institution(s)
Unité de recherche en Génétique Épidémiologique et structure des populations humaines, INSERM U535, Villejuif, France; Laboratoire Bordelais de Recherche en Informatique, UMR 5800, Bordeaux, France; Programme Avenir, INSERM U458, hôpital Robert Debré, AP-HP, Paris, France; Fondation Jean Dausset, Paris, France

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