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alu-detect specifications

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Unique identifier OMICS_09837
Name alu-detect
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Illumina
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Michael Brudno <>

Publication for alu-detect

alu-detect citation

library_books

Discovery and characterization of Alu repeat sequences via precise local read assembly

2015
PMCID: 4666360
PMID: 26503250
DOI: 10.1093/nar/gkv1089

[…] the na18506 sample resulted in 1375 putative alu insertions having a quality score of 6 or higher. a total of 820 alu insertions were fully assembled, of which 774 intersect with calls reported by alu-detect (out of 1727 total calls) (), again implying a fdr around 5%., in validation, our specific goals were to demonstrate (i) the presence of the alu at that chromosomal location, (ii) […]


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alu-detect institution(s)
Department of Computer Science, University of Toronto, Toronto, ON, Canada
alu-detect funding source(s)
Canadian Institutes for Health Research (CIHR) Catalyst Grant and Ontario Research Fund (ORF) GL2 grant

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