Alview statistics

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Associated diseases

Associated diseases

Alview specifications

Information


Unique identifier OMICS_10692
Name Alview
Alternative name Alignment Viewer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Inputs are files of short-read sequences aligned to a reference genome in the SAM/BAM format and files containing reference genome data.
Output data Outputs are visualizations of these aligned short reads.
Operating system Unix/Linux, Mac OS, Windows
Programming languages C
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Richard Finney <>

Information


Unique identifier OMICS_10692
Name Alview
Alternative name Alignment Viewer
Interface Web user interface
Restrictions to use None
Input data Inputs are files of short-read sequences aligned to a reference genome in the SAM/BAM format and files containing reference genome data.
Output data Outputs are visualizations of these aligned short reads.
Programming languages C
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Richard Finney <>

Publication for Alignment Viewer

Alview in publication

PMCID: 5322599
PMID: 28228136
DOI: 10.1186/s12967-017-1138-3

[…] ) in a given sample were then examined for the presence/absence of supporting reads in other samples using samtools mpileup [, ]. mutations were visually verified by examining supporting reads using alview [], and all somatic mutations were annotated using avia []., a 70 year old patient was diagnosed with metastatic prostate cancer, confirmed with biopsy of a bone metastasis (fig. a). […]


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Alview institution(s)
Computational Genomics Research Group, Center for Bioinformatics and Information Technology, National Cancer Institute, Bethesda, MD, USA
Alview funding source(s)
This study is supported by the NCI of the U.S. National Institutes of Health.

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