AMAP statistics

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Associated diseases

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AMAP specifications

Information


Unique identifier OMICS_22101
Name AMAP
Alternative name Another Multidimensional Analysis Package
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.8-14
Stability Stable
Source code URL https://cran.r-project.org/web/packages/amap/index.html
Maintained Yes

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Documentation


Maintainers


  • person_outline Antoine Lucas <>
  • person_outline Victor Padilha <>

Additional information


http://mulcyber.toulouse.inra.fr/projects/amap/

AMAP in publications

 (3)
PMCID: 5594072
PMID: 28936162
DOI: 10.3389/fnmol.2017.00283

[…] using r (version 3.2.5); first the top 8% most variable genes were identified across all eight samples, irrespective of treatment and a euclidean distance matrix was produced using r package—another multidimensional analysis package (lucas, ). the matrix was used as the input for unsupervised hierarchical clustering, which clusters samples according to the level of similarity identified […]

PMCID: 4920993
PMID: 27342315
DOI: 10.1186/s12864-016-2805-0

[…] is important for further investigation of the molecular basis of seed development not only in perilla, but also in other oilseeds., hierarchical clustering was performed with the 6012 degs using another multidimensional analysis package (amap) library in r [] to examine the similarity and diversity of expression profiles. similarity of expression pattern of genes was estimated with pearson’s […]

PMCID: 3536718
PMID: 23174095
DOI: 10.1186/1868-7083-4-22

[…] of the target cpg probes. spearman’s correlation and principal component analysis were performed with r (ver. 2.13.0; http://www.r-project.org/). hierarchical clustering analysis was performed by another multidimensional analysis package (amap) implemented in the r software package []., dna methylation levels of the selected cpg sites were measured by psq 96ma (qiagen), according […]


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AMAP institution(s)
Institute of Mathematics and Computer Sciences, University of São Paulo, São Carlos, Brazil; College of Science and Engineering, James Cook University, Townsville, QLD, Australia
AMAP funding source(s)
Supported by the São Paulo Research Foundation (FAPESP) (grants #2014/08840-0 and #2013/18698-4) and the Brazilian National Research Council (CNPq) (grant #304137/2013-8).

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