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AMDIS specifications

Information


Unique identifier OMICS_23701
Name AMDIS
Alternative name Automated Mass spectral Deconvolution and Identification System
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Windows
Computer skills Medium
Version 2.71
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Hans Maurer <>

Publications for Automated Mass spectral Deconvolution and Identification System

AMDIS in pipelines

 (9)
2018
PMCID: 5878833
PMID: 29628813
DOI: 10.1007/s11306-018-1352-x

[…] kept at 320 °c for 10 min. a c10–c40 n-alkane standard mixture (neochema, bodenheim, germany) was applied at the beginning for retention index calculation. all gc–ms data files were processed with amdis (version 2.71, national institute of standards and technology, gaithersburg, md, usa) and the web-based tool spectconnect (styczynski et al. ) to perform the peak picking, spectral […]

2017
PMCID: 5476930
PMID: 28676804
DOI: 10.3389/fpls.2017.00982

[…] for polar and non-polar extractions; the derivatization of extracts and gc-ms analysis followed the descriptions by . mass spectra deconvolution and metabolite identification were carried out using amdis software and a custom in-house ei-ms metabolite library. peak picking, alignment and quantification were conducted using met-idea software ()., for quantification of amino acids, derivatization […]

2017
PMCID: 5553085
PMID: 28868138
DOI: 10.5256/f1000research.12777.r23714

[…] of the data may be developed. moreover, a major challenge in the gc-ms-based analysis is the lack of suitable informatic tools specific for untargeted metabolomics. many authors still rely on amdis, notwithstanding its known problems. it is worth stressing that errors in data extraction have an equal or greater effect on the downstream data analysis. we performed our data processing […]

2017
PMCID: 5553085
PMID: 28868138
DOI: 10.5256/f1000research.12777.r23714

[…] from 45°c to 215°c in over 65 mins. data pre-processing was performed in the agilent masshunter suit (version 8 of qualitative workflows and profinder), metabolite detector (version 2.5), and amdis (automated mass spectral deconvolution and identification system) (version 2.72), and the accuracy of data extraction of these software tools was compared. data was further processed […]

2016
PMCID: 5126694
PMID: 27897248
DOI: 10.1038/srep37976

[…] for separation. selected ion monitoring (sim) mode was chosen for the instrumental analysis. peak deconvolution and the identification and selection of the characteristic ions were performed by using amdis, leco chromatof and in-house software. the spit ratio was 10:1. the carrier gas was helium, and the flow rate was 1.2 ml/min. the injector, interface and ion source temperatures were set to 280  […]


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AMDIS in publications

 (270)
PMCID: 5950193
PMID: 29785207
DOI: 10.1186/s13068-018-1135-7

[…] 85–500 m/z at electron impact of 70 ev, and the temperatures of the ion source and transfer line were 230 and 280 °c, respectively., the raw data obtained from gc/ms analysis were pre-processed in automated mass spectral deconvolution and identification system (amdis) software [] for peak detection and deconvolution of mass spectra. the pre-processed data were uploaded into spectconnect […]

PMCID: 5946010
PMID: 29780370
DOI: 10.3389/fmicb.2018.00857

[…] index (ri) was calculated from the added n-alkanes. metabolites were identified by comparison of ri-values and fragment masses to the golm metabolome database (; ) using the programs tagfinder and amdis (nist)., statistical analysis was performed using r version 3.3.0 (). metabolite data were normalized using sample weights and the internal standard ribitol and subsequently logarithmized. […]

PMCID: 5928220
PMID: 29712949
DOI: 10.1038/s41598-018-24936-5

[…] this approach was used to circumvent limitations imposed by amdis on mass spectral library size., the raw files from the gc-ms were converted into cdf/aia format and then deconvoluted using amdis. an r-script was used to integrate peak intensities. the r-script returns a value for the retention time bin defined by amdis for a particular ion across all samples, and is thus more sensitive […]

PMCID: 5908842
PMID: 29674725
DOI: 10.1038/s41598-018-23670-2

[…] 20 °c.min−1 to 330 °c, injector 275 °c, volume 3 µl, splitless pulse, tic 40 a 800 µma. data acquisition and spectral profiles analysis were performed by the msd (chemstation d.02.00.275 agilent) and amdis (automated mass spectral deconvolution and identification system) software and compared to the nist database., micro ct images of live and recently dead flies were attained to reveal the path of […]


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AMDIS institution(s)
Department of Experimental and Clinical Toxicology, Institute of Experimental and Clinical Pharmacology and Toxicology, Saarland University, Homburg, Germany; Institute of Forensic Medicine, Friedrich Schiller University, Jena, Germany

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