AMDIS pipeline

AMDIS specifications


Unique identifier OMICS_23701
Alternative name Automated Mass spectral Deconvolution and Identification System
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Windows
Computer skills Medium
Version 2.71
Stability Stable
Maintained Yes



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  • person_outline Hans Maurer <>

Publications for Automated Mass spectral Deconvolution and Identification System

AMDIS citations

PMCID: 5126694

[…] for separation. selected ion monitoring (sim) mode was chosen for the instrumental analysis. peak deconvolution and the identification and selection of the characteristic ions were performed by using amdis, leco chromatof and in-house software. the spit ratio was 10:1. the carrier gas was helium, and the flow rate was 1.2 ml/min. the injector, interface and ion source temperatures were set to 280  […]

PMCID: 5085796

[…] gas. the applied temperature program started at 80 °c for the first two min and was heated up to 320 °c over 50 min and kept at 320 °c for 10 min., spectra of all gc-ms analysis were processed using amdis (version 2.71, national institute of standards and technology, gaithersburg, md, usa) and nist ms search 2.0 (national institute of standards and technology, gaithersburg, md, usa) […]

PMCID: 4626786

[…] performed by 500 times permutation tests686970. metabolites with variable importance in projection (vip) values of greater than 1 were identified as potential marker metabolites70. amdis software (automated mass spectral deconvolution and identification system, version 2.0, nist, usa) was used to identify metabolites in chromatograms and the mass spectra of all detected compounds were compared […]

PMCID: 4452085

[…] ended after 19.5 minutes., the gc-tofms data were analyzed using the leco chromatof software. the gc-qms data were processed by the automated mass spectral deconvolution and identification system (amdis) [28] for peak detection, deconvolution, and metabolite identification. the results were then imported into mass profiler professional (mpp) for alignment and statistical analysis. in addition, […]

AMDIS institution(s)
Department of Experimental and Clinical Toxicology, Institute of Experimental and Clinical Pharmacology and Toxicology, Saarland University, Homburg, Germany; Institute of Forensic Medicine, Friedrich Schiller University, Jena, Germany

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