AME pipeline

AME specifications

Information


Unique identifier OMICS_08380
Name AME
Alternative name Analysis of Motif Enrichment
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data DNA sequences, DNA/RNA motifs
Operating system Unix/Linux
Computer skills Advanced
Version 4.10.1
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Timothy L. Bailey <>

Information


Unique identifier OMICS_08380
Name AME
Alternative name Analysis of Motif Enrichment
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data DNA sequences, DNA/RNA motifs
Computer skills Basic
Version 4.10.1
Stability Stable
Maintained Yes

Maintainer


  • person_outline Timothy L. Bailey <>

Publication for Analysis of Motif Enrichment

AME IN pipeline

2017
PMCID: 5677536
PMID: 28920958
DOI: 10.1038/nm.4416

[…] on a virtual mrna transcript, sites whose feature lengths represent the median feature lengths of transcripts under analysis. a gaussian estimate of kernel density was then plotted as a metagene. analysis of motif enrichment was performed on the sense dna sequence ±2 nucleotides up- and down-stream of the called truncation sites using the meme suite., relative levels of internal m6a […]

AME institution(s)
Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland, Australia

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