AMEN pipeline

AMEN specifications

Information


Unique identifier OMICS_14730
Name AMEN
Alternative name Annotation Mapping Expression and Network
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Medium
Version 1.5.4
Stability Stable
Requirements ActiveTcl, GraphViz
Maintained Yes

Download


Versioning


Add your version

Documentation


Maintainer


  • person_outline Michael Primig <>

Publication for Annotation Mapping Expression and Network

AMEN IN pipelines

 (2)
2013
PMCID: 3536770
PMID: 23301058
DOI: 10.1371/journal.pone.0053302

[…] by the median vector signal of all arrays for this same spot ((si/vi) x medvi). expression values were then log2-transformed and submitted to a quantile-quantile normalization [26] using the amen software (http://sourceforge.net/projects/amen/; [27]. raw data as well as a normalized expression file are available at the geneomnibus public data repository […]

2013
PMCID: 3536770
PMID: 23301058
DOI: 10.1371/journal.pone.0053302

[…] for this same spot ((si/vi) x medvi). expression values were then log2-transformed and submitted to a quantile-quantile normalization [26] using the amen software (http://sourceforge.net/projects/amen/; [27]. raw data as well as a normalized expression file are available at the geneomnibus public data repository (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=gse16030)., non-informative […]

AMEN institution(s)
Institut National de la Santé et de la Recherche Médicale (Inserm) Unité 625, Groupe d'Etude de la Reproduction chez l'Homme et les Mammifères, Institut Fédératif de Recherche 140, Université de Rennes 1, Campus de Beaulieu, Rennes, France
AMEN funding source(s)
This work was supported by the Institut National de la Santé et de la Recherche Médicale (Inserm), the Swiss Institute of Bioinformatics (SIB) and Région Bretagne grant No R07077NN.

AMEN reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review AMEN