AMF specifications


Unique identifier OMICS_12147
Name AMF
Alternative name AgroMarker Finder
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input data Either single-end or paired-end data
Input format FASTQ
Output format Microsoft Excel spreadsheet or tab-separated text files
Operating system Unix/Linux
Programming languages Java
Computer skills Medium
Stability Stable
JDK, Burrows-Wheeler Aligner, SAMtools, GATK
Source code URL
Maintained Yes




No version available



  • person_outline Zheng Yuan

Publication for AgroMarker Finder

AMF institution(s)
State Key Laboratory of Hybrid Rice, Shanghai Jiao Tong University–University of Adelaide Joint Centre for Agriculture and Health, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China; Novel Bioinformatics Company, Shanghai, China; Key Laboratory of Crop Marker-Assisted Breeding of Huaian Municipality, Jiangsu Collaborative Innovation Center of Regional Modern Agriculture and Environmental Protection, Huaiyin Normal University, Jiangsu, China; Plant Genomics Center, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, South Australia, Australia; Department of Biology, East Carolina University, Greenville, NC, USA
AMF funding source(s)
This work was supported by the Funds from the EU FP7 project (DECATHLON, 613908), Project on Breeding from Agriculture Commission of Shanghai (2013-13, 2014-1-3), National Natural Science Foundation of China (31470397, 31270222, 31230051 and 31110103915), Key Project on Basic Research from Science and Technology Commission of Shanghai (14JC1403900, 14391917100), and China Talents of Discipline to Universities (111 Project, B14016).

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