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Amino acid mutation identification software tools| MS-based untargeted proteomics

Amino acid mutations in proteins can be found by searching tandem mass spectra acquired in shotgun proteomics experiments against protein sequences predicted from genomes. Traditionally, unconstrained searches for amino acid mutations have been…
PEAKS
Desktop

PEAKS

Identifies peptides from a sequence database with tandem mass spectrometry…

Identifies peptides from a sequence database with tandem mass spectrometry data. PEAKS employs de novo sequencing as a subroutine and exploits the de novo sequencing results to improve both the speed…

Sipros
Desktop

Sipros

A database-searching algorithm for peptide and protein identification in…

A database-searching algorithm for peptide and protein identification in shotgun proteomics. Hybrid Message Passing Interface/OpenMP parallelism of the new Sipros architecture allowed its computation…

TagRecon
Desktop

TagRecon

An open-source software that leverages inferred sequence tags to identify…

An open-source software that leverages inferred sequence tags to identify unanticipated mutations from clinical proteomic data sets. TagRecon can effectively identify peptides even in the face of…

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