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AMOS

Uses a collection of tools and class interfaces for the assembly of DNA reads. AMOS includes a robust infrastructure, modular assembly pipelines, and tools for overlapping, consensus generation, contigging, and assembly manipulation. The AMOS pipeline config file can be easily modified by the user to add additional processing steps. AMOScmp requires the NUCmer whole genome alignment utility which is part of the MUMmer package.

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AMOS forum

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AMOS classification

AMOS specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
C, C++, Perl
Computer skills:
Advanced
Requirements:
QT
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
Artistic License version 2.0
Stability:
Stable
Maintained:
Yes

Subtools

  • Minimus
  • Hawkeye

AMOS distribution

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Credits

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Publications

Institution(s)

Cold Spring Harbor, New York, NY, USA

Link to literature

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