Protocols

AMPDB specifications

Information


Unique identifier OMICS_20982
Name AMPDB
Alternative name Arabidopsis Mitochondrial Protein Database
Restrictions to use None
Database management system MySQL
Community driven No
Data access Browse
User data submission Not allowed
Version 4.0
Maintained Yes

Taxon


  • Plants and Fungi
    • Arabidopsis thaliana

Publication for Arabidopsis Mitochondrial Protein Database

AMPDB citations

 (2)
library_books

MetNet Online: a novel integrated resource for plant systems biology

2012
BMC Bioinformatics
PMCID: 3483157
PMID: 23066841
DOI: 10.1186/1471-2105-13-267

[…] sis protein localization databases that collect data from a combination of experimentation, literature, and predictions. Specialized resources are used for particular organelles: PPDB [,], plprot [], AMPDB [], AraPerox [], and AtNoPDB []. including . PPDB (Friso et al., 2004) and plprot (Kleffmann et al., 2006) contain plastid proteins of Arabidopsis and other plants. AMPDB (Heazlewood and Millar, […]

call_split

Mining the soluble chloroplast proteome by affinity chromatography

2011
Proteomics
PMCID: 3531887
PMID: 21365755
DOI: 10.1002/pmic.201000495
call_split See protocol

[…] entifier (AGI) codes) were imported into Microsoft Excel for further analyses. Redundant protein identifications were removed using the advanced filter. Proteins were searched against PPDB , plprot , AMPDB , SUBA and AraPerox databases. All proteins not found in any of the abovementioned databases were manually inspected regarding experimental verification of subcellular localization by searchin […]

AMPDB institution(s)
Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, The University of Western Australia, Crawley, WA, Australia
AMPDB funding source(s)
Supported through grants provided by the Australian Research Council Discovery Program, an ARC QEII Research Fellowship and a UWA Postdoctoral Research Fellowship.

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