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Publication for AMPer
Neuronal circadian clock protein oscillations are similar in behaviourally rhythmic forager honeybees and in arrhythmic nurses
[…] the highest fluorescent intensity compared with several successive images from a focal cell. We used the DAPI staining to define the nucleus of the focal cell. In all the cells in which we quantified amPER immunostaining intensity, the amPER-ir signal appeared to be limited to the nucleus. We calculated the cluster average based on the intensity measured for individual cells. We normalized the sig […]
Computer aided identification of a Hevein like antimicrobial peptide of bell pepper leaves for biotechnological use
[…] c DB Antimicrobial Peptide Search (APD2) and Database Linking MPAs, without successful results about similarity in general or for species-specific searches. In the portal Bioactive Peptide Databases, Amper DB detected alignment (P < 0.05) with two mature Hevein fragments from Hevea brasiliensis and Eucommia ulmoides; CAMP found 16 Hevein-like and/or CBD-protein that showed significant alignments ( […]
Scrutinizing the immune defence inventory of Camponotus floridanus applying total transcriptome sequencing
[…] The creation of used HMMs of AMPs has been described elsewhere . Briefly, in the AMPer database  1045 mature peptides associated with known antimicrobial activities were considered to create 146 HMMs of mature peptides. All the 146 HMMs of mature peptides were retrieved from the […]
Towards the Improved Discovery and Design of Functional Peptides: Common Features of Diverse Classes Permit Generalized Prediction of Bioactivity
[…] icrobial peptides, AntiBP2 , based on a Support Vector Machine (SVM) was trained on peptides from the APD , using the 15 N and C terminal residues and the amino acid composition of the whole peptide. AMPer , antimicrobial peptide predictor, used hidden Markov models (HMMs) constructed from known antimicrobial peptides to discover novel antimicrobial peptide candidates (see http://marray.cmdr.ubc.c […]
Prediction of Antimicrobial Peptides Based on Sequence Alignment and Feature Selection Methods
[…] the similarity principle and hence cannot avoid some sort of arbitrariness or false positive.Up to now, several computational methods , , , , , , have been proposed for the predicting AMPs. However, AMPer method is not available at http://www.cnbi2.com/cgi-bin/amp.pl as described in . BACTIBASE , and PhytAMP methods were specifically designed for bacteriocin and plant respectively. As for Anti […]
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