ampliCan specifications


Unique identifier OMICS_26566
Name ampliCan
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data A configuration file describing the experiment(s) and some files of sequenced reads.
Input format FASTQ
Output format HTML
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.1.3
Stability Stable
Maintained Yes



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  • person_outline Kornel Labun <>
  • person_outline Eivind Valen <>

Publication for ampliCan

ampliCan institution(s)
Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway; Department of Biology, University of Utah, Salt Lake City, UT, USA; Sars International Centre for Marine Molecular Biology, University of Bergen, Bergen, Norway; Department of Pathology and Cell Biology, Columbia University, New York, NY, USA; Wyss Institute for Biologically Inspired Engineering, Harvard University, Cambridge, MA, USA; Department of Genetics, Harvard Medical School, Boston, MA, USA
ampliCan funding source(s)
Supported by the Bergen Research Foundation and the Norwegian Research Council (FRIMEDBIO #250049), University of Bergen core funding and the American Cancer Society and University of Utah startup funding.

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