ampliCan specifications

Unique identifier:
OMICS_26566
Interface:
Command line interface
Input data:
A configuration file describing the experiment(s) and some files of sequenced reads.
Output format:
HTML
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Software type:
Pipeline/Workflow
Restrictions to use:
None
Input format:
FASTQ
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 3.0
Version:
1.1.3
Maintained:
Yes

versioning

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ampliCan distribution

download

ampliCan support

Maintainers

  • Kornel Labun <>
  • Eivind Valen <>

forum

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Credits

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Publications

Institution(s)

Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway; Department of Biology, University of Utah, Salt Lake City, UT, USA; Sars International Centre for Marine Molecular Biology, University of Bergen, Bergen, Norway; Department of Pathology and Cell Biology, Columbia University, New York, NY, USA; Wyss Institute for Biologically Inspired Engineering, Harvard University, Cambridge, MA, USA; Department of Genetics, Harvard Medical School, Boston, MA, USA

Funding source(s)

Supported by the Bergen Research Foundation and the Norwegian Research Council (FRIMEDBIO #250049), University of Bergen core funding and the American Cancer Society and University of Utah startup funding.

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