Amplicon sequencing data analysis software tools

Amplicon sequencing data analysis software tools

Amplicon sequencing, or ultra-deep sequencing, is a targeted method to analyse genetic variation in specific genomic regions. Products of PCR (amplicons) are used for high-throughput sequencing to identify and characterize new variants. This method is particularly suited for the analysis of rare somatic mutations in cancer, and sequencing of bacterial 16S rRNA gene across multiple species for phylogeny studies.

Data preprocessing

Data processing

Data analysis

Sequence alignment

Genome variant analysis

Protein sequence/Expression

Annotation

Workflows

File manipulation

Unclassified tools