AmpliconNoise specifications

Information


Unique identifier OMICS_01112
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Roche
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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AmpliconNoise article

AmpliconNoise citations

 (2)
2015
PMCID: 4500406

[…] replicate samples were spread over all sequencing runs as internal controls and negative controls were included to verify reagents were uncontaminated., shotgun processed data were denoised using ampliconnoise [16] as part of the ‘quantitative insights into microbial ecology’ v1.5.0 package [17] followed by chimera-removal with chimeraslayer.[18] sequences were aligned using the silva rrna […]

2014
PMCID: 4415053

[…] 454 life sciences gs flx (roche) following the roche amplicon lib-l protocol. replicate samples were spread over all sequencing runs as internal controls., shotgun processed data were denoised using ampliconnoise [22] as part of the quantitative insights into microbial ecology version 1.5.0 package [23], followed by chimera removal with chimeraslayer [24]. sequences were aligned using the silva […]

AmpliconNoise institution(s)
Department of Civil Engineering, University of Glasgow, Rankine Building, Glasgow, UK

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