Amplified Fragment Length POlymorPhism pipeline

Amplified Fragment Length POlymorPhism specifications


Unique identifier OMICS_17408
Name Amplified Fragment Length POlymorPhism
Alternative name AFLPOP
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format XLS
Output format XLS
Operating system Unix/Linux
Computer skills Advanced
Version 1.1
Stability Stable
Maintained Yes



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  • person_outline Louis Bernatchez <>

Publication for AFLPOP

Amplified Fragment Length POlymorPhism IN pipelines

PMCID: 3403953
PMID: 22607623
DOI: 10.1186/1756-3305-5-97

[…] other members of the same population was formally tested using the maximum-likelihood jackknife re-allocation technique described by campbell et al. [32], based on 2000 simulated genotypes, by the aflpop program (version 1.1) of duchesne and bernatchez [33]., pairwise genetic distances between the populations were calculated following reynolds et al. [34], using aflp-survey. these distances […]

PMCID: 3176195
PMID: 21859457
DOI: 10.1186/1471-2156-12-73

[…] european dataset, and compared this with the mean intra-individual genetic distance (= equivalent to the error term). furthermore, we implemented the simulation procedure in the programme aflpop [62] to investigate the power of the data for the assignment test., to estimate the degree of habitat fragmentation in the study area, we mapped the natural habitats suitable for juniperus […]

Amplified Fragment Length POlymorPhism institution(s)
Département de biologie, Université Laval, Ste-Foy, QC, Canada

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