AmpliSAT pipeline

AmpliSAT specifications

Information


Unique identifier OMICS_10988
Name AmpliSAT
Alternative name Amplicon Sequencing Analysis Tools
Software type Toolkit/Suite
Interface Web user interface
Restrictions to use None
Input data Reads
Input format FASTQ/FASTA
Output data Analysis results
Output format Excel file, FASTA files
Biological technology Illumina, Life Technologies, Roche
Programming languages Javascript, Perl
Parallelization Other
Computer skills Basic
Stability Stable
Maintained Yes

Subtools


  • AmpliCANCER
  • AmpliCDR3
  • AmpliCHECK
  • AmpliCLEAN
  • AmpliCOMBINE
  • AmpliCOMPARE
  • AmpliHLA
  • AmpliLEGACY
  • AmpliMERGE
  • AmpliMIX
  • AmpliSAS
  • AmpliSIM
  • AmpliTAXO
  • AmpliTCR

Documentation


Maintainer


Information


Unique identifier OMICS_10988
Name AmpliSAT
Alternative name Amplicon Sequencing Analysis Tools
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Biological technology Illumina, Life Technologies, Roche
Operating system Unix/Linux
Programming languages Javascript, Perl
Parallelization Other
Computer skills Advanced
Stability Stable
Maintained Yes

Subtools


  • AmpliCANCER
  • AmpliCDR3
  • AmpliCHECK
  • AmpliCLEAN
  • AmpliCOMBINE
  • AmpliCOMPARE
  • AmpliHLA
  • AmpliLEGACY
  • AmpliMERGE
  • AmpliMIX
  • AmpliSAS
  • AmpliSIM
  • AmpliTAXO
  • AmpliTCR

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Documentation


Maintainer


Publication for Amplicon Sequencing Analysis Tools

AmpliSAT IN pipeline

2018
PMCID: 5792522
PMID: 29435243
DOI: 10.1002/ece3.3757

[…] alleles if present in one or both parents in the same run., as the sequences were trimmed in the modified pipeline from sommer et al. (2013) in order to match published sequences, the sequences from amplisas were aligned and trimmed correspondingly in mega7, and collapsed using fastx toolkit. identical alleles obtained in different pipelines were given identical names using standard unix […]

AmpliSAT institution(s)
Evolutionary Biology Group, Faculty of Biology, Adam Mickiewicz University, Poznan, Poland
AmpliSAT funding source(s)
Supported by MAESTRO grant UMO-2013/08/A/NZ8/00153 from National Science Centre.

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