amrfinder specifications

Information


Unique identifier OMICS_07051
Name amrfinder
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Andrew Smith <>

Publication for amrfinder

amrfinder in publication

PMCID: 4076608
PMID: 24887417
DOI: 10.1186/gb-2014-15-5-r68

[…] corresponded to fdr <50% based on 1,000 simulations, but resulted in only three known imprinted genes., amrs were identified by the computational method described by fang et al. [] with the tool 'amrfinder'. the tool uses a fixed-width window (that is, fixed number of cpg sites) to identify amrs genome-wide. for each window, the likelihood values of observed reads from bisulfite sequencing […]


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amrfinder institution(s)
Molecular and Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA, USA

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