AmrPlusPlus statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Bioinformatics workflows chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

AmrPlusPlus specifications

Information


Unique identifier OMICS_14218
Name AmrPlusPlus
Software type Pipeline/Workflow
Interface Graphical user interface
Restrictions to use None
Input data A resistance database in the form of a FASTA file, a host/background genome in FASTA format for the removal of host/background contamination and a single or pair of FASTQ datasets
Input format FASTA
Output data A resistome counts, a rarefaction curves and read pair haplotypes
Operating system Unix/Linux, Mac OS
Programming languages C++
License MIT License
Computer skills Medium
Version 1.1
Stability Stable
Maintained Yes

Download


Versioning


Add your version

Documentation


Maintainer


  • person_outline Christina Boucher <>

Publication for AmrPlusPlus

AmrPlusPlus in pipeline

2018
PMCID: 5897366
PMID: 29651035
DOI: 10.1038/s41598-018-24280-8

[…] outputs for both resistome and microbiome analyses of metagenomic sample reads from a single metagenome-resistome workflow. following trimmomatic as the first step in the workflow, kraken and the amrplusplus tools were programmed to run in parallel. for microbiome analysis, reads passing quality filters from trimmomatic were classified using the updated custom kraken database comprised […]


To access a full list of citations, you will need to upgrade to our premium service.

AmrPlusPlus in publication

PMCID: 5897366
PMID: 29651035
DOI: 10.1038/s41598-018-24280-8

[…] web server instance supported by the national microbiology laboratory, public health agency of canada (phac nml galaxy). a custom workflow integrating kraken taxonomic classification tools and the amrplusplus resistome analysis pipeline tools was setup in galaxy to obtain simultaneous outputs for both resistome and microbiome analyses of metagenomic sample reads from a single […]


To access a full list of publications, you will need to upgrade to our premium service.

AmrPlusPlus institution(s)
Department of Clinical Sciences, Colorado State University, Fort Collins, CO, USA; Department of Microbiology, Immunology, and Pathology, Colorado State University, Fort Collins, CO, USA; Department of Computer Science, Colorado State University, Fort Collins, CO, USA; Department of Animal Sciences, Colorado State University, Fort Collins, CO, USA; Department of Biochemistry and Molecular Genetics, University of Colorado Denver School of Medicine, Aurora, CO, USA; Department of Computer and Information Science and Engineering, University of Florida, Gainesville, FL, USA
AmrPlusPlus funding source(s)
This work was supported by the Infectious Disease Supercluster and CSU Ventures at Colorado State University; Beef Checkoff; United States Department of Agriculture (2014-05257, 2015-03538) and the National Institutes of Health (5T32OD012201).

AmrPlusPlus reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review AmrPlusPlus