AmrPlusPlus specifications

Unique identifier:
OMICS_14218
Interface:
Graphical user interface
Input data:
A resistance database in the form of a FASTA file, a host/background genome in FASTA format for the removal of host/background contamination and a single or pair of FASTQ datasets
Output data:
A resistome counts, a rarefaction curves and read pair haplotypes
Programming languages:
C++
Computer skills:
Medium
Stability:
Stable
Software type:
Pipeline/Workflow
Restrictions to use:
None
Input format:
FASTA
Operating system:
Unix/Linux, Mac OS
License:
MIT License
Version:
1.1
Maintained:
Yes

versioning

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AmrPlusPlus distribution

download

AmrPlusPlus support

Documentation

Maintainer

  • Christina Boucher <>

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Credits

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Publications

Institution(s)

Department of Clinical Sciences, Colorado State University, Fort Collins, CO, USA; Department of Microbiology, Immunology, and Pathology, Colorado State University, Fort Collins, CO, USA; Department of Computer Science, Colorado State University, Fort Collins, CO, USA; Department of Animal Sciences, Colorado State University, Fort Collins, CO, USA; Department of Biochemistry and Molecular Genetics, University of Colorado Denver School of Medicine, Aurora, CO, USA; Department of Computer and Information Science and Engineering, University of Florida, Gainesville, FL, USA

Funding source(s)

This work was supported by the Infectious Disease Supercluster and CSU Ventures at Colorado State University; Beef Checkoff; United States Department of Agriculture (2014-05257, 2015-03538) and the National Institutes of Health (5T32OD012201).

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