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AMYLPRED specifications

Information


Unique identifier OMICS_03867
Name AMYLPRED
Interface Web user interface
Restrictions to use Academic or non-commercial use
Computer skills Basic
Stability Stable
Maintained Yes

Publication for AMYLPRED

AMYLPRED in publications

 (24)
PMCID: 5872305
PMID: 29371496
DOI: 10.3390/jof4010002

[…] and visualized with jalview []. the amyloïdogenic regions, i.e., the regions with tendency to self-assemble into a cross β–structure that forms the core of amyloid fibers, were predicted with the amylpred2 method []. hydrophobicity profiles were obtained at the expasy server using the eisenberg scale with default parameters []., rna-seq data obtained previously to compare the transcriptomes […]

PMCID: 5522423
PMID: 28733641
DOI: 10.1038/s41598-017-06419-1

[…] contribution to the pathogenesis of aa amyloidosis further experiments need to be carried out., amyloid-prone regions of murine saa1.1 were predicted using the programs waltz, foldamyloid, tango, amylpred and aggrescan., the protein structure homology model was generated using the swiss-model protein structure homology-modelling server (www.swissmodel.expasy.org). the amino acid sequence […]

PMCID: 5618227
PMID: 28661450
DOI: 10.3390/biom7030046

[…] examined, none possess a classic prion-like domain with q/n-rich regions but instead contain multiple short amino acid stretches with predicted inherent amyloidogenic propensity as determined by the amylpred2 algorithm []., the significance of the zp/egg coat as an amyloid may be several-fold. as proposed in the fish and silkmoth, the inherent stability of the zp amyloid would provide protection […]

PMCID: 5460171
PMID: 28588252
DOI: 10.1038/s41598-017-03082-4

[…] regions, and zinc ions are required for formation of amyloid structure, . we hypothesized that sap6 contains amyloidogenic regions that may account for the zinc-mediated cellular aggregation. using amylpred2 software (that identifies amyloidogenic regions based on a consensus score of 11 computational tools), we identified four putative amyloidogenic regions within c. albicans sap6 […]

PMCID: 5380434
PMID: 28323618
DOI: 10.7554/eLife.24869.022

[…] and resuspended 1x sds sample buffer for immunoblot analysis., the protein aggregation propensity and amylogenic regions of cdzc, cdzd and cdzi were predicted based on amino acid sequence using amylpred 2 (), walz (high specificity threshold) (), metamyl (with high specificity threshold) () and pasta 2.0 (with peptides threshold) (). a sequence region was considered aggregation prone […]


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AMYLPRED institution(s)
Department of Cell Biology and Biophysics, Faculty of Biology, University of Athens, Panepistimiopolis, Athens, Greece

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