Anaconda specifications

Information


Unique identifier OMICS_22079
Name Anaconda
Alternative name AN Automated pipeline for somatic COpy Number variation Detection and Annotation
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data A paired tumor, a normal file, a genome reference file, an exome file.
Input format BAM,FASTA,BED
Output data A file with detailed display of the information about parameter settings, detected CNVs and annotation results.
Output format HTML
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Requirements
jdk, gcc, g++
Maintained Yes

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Versioning


No version available

Maintainers


  • person_outline Yuanwei Zhang
  • person_outline Xiaohua Jiang
  • person_outline Zhenhua Yu

Publication for AN Automated pipeline for somatic COpy Number variation Detection and Annotation

Anaconda institution(s)
Molecular and Cell Genetics Laboratory, The CAS Key Laboratory of Innate Immunity and Chronic Diseases, Hefei National Laboratory for Physical Sciences at Microscale, School of Life Sciences, CAS Center for Excellence in Molecular Cell Science, University of Science and Technology of China, Hefei, China; Reproductive Medicine Center of Jinghua Hospital, USTC-Shenyang Jinghua Hospital Joint Center of Human Reproduction and Genetics, Shenyang, China; School of Information Science and Technology, University of Science and Technology of China, Hefei, China
Anaconda funding source(s)
Supported by the National Key Research and Developmental Program of China (2016YFC1000600), National Basic Research Program of China (2013CB945502 and 2014CB943101), the Strategic Priority Research Program of the Chinese Academy of Sciences (XDB19000000), the National Natural Science Foundation of China (31,630,050, 31,371,519, 31,501,202, 31,501,199 and 31,301,227), the Natural Science Foundation of China - Israel Science Foundation (31461143013–1183/14), and the Fundamental Research Funds for the Central Universities (WK2340000069).

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