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ANAIS specifications

Information


Unique identifier OMICS_24156
Name ANAIS
Interface Web user interface
Restrictions to use None
Input data Some NimbleGen files.
Output format ZIP
Programming languages Python, R
Computer skills Basic
Version 1.1.0
Stability Stable
Registration required Yes
Maintained Yes

Maintainer


  • person_outline Adeline Simon <>

Publication for ANAIS

ANAIS in publications

 (4)
PMCID: 5613140
PMID: 28983288
DOI: 10.3389/fmicb.2017.01808

[…] in a nimblegen station and washed three times. cyanine 3 fluorescence was scanned on a ms200 scanner (roche nimblegen). raw intensities were obtained from the nimblescan software (nimblegen). the anais web interface (simon and biot, ) was used to normalize data and detect significantly expressed genes, i.e., genes expressed more than random probes included on the chip (p < 0.01). raw […]

PMCID: 4210507
PMID: 25306241
DOI: 10.1186/1471-2164-15-891

[…] levels were calculated for each gene from the independent probes on the array and were further analyzed. gene-normalized data were subjected to analysis of nimblegen array interface suite []. anais performs an anova test on log-10 transformed data to identify statistically differentially expressed genes. this test uses the observed variance of gene measurements across the three replicated […]

PMCID: 3945186
PMID: 24603691
DOI: 10.1371/journal.pgen.1004227

[…] levels were calculated for each gene from the independent probes on the array and were further analysed., gene-normalised data were subjected to analysis of nimblegen array interface suite (anais; http://anais.versailles.inra.fr; ). anais performs an anova test on log10 transformed data to identify statistically differentially expressed genes. this test uses the observed variance […]

PMCID: 3886904
PMID: 24415947
DOI: 10.1371/journal.pgen.1004040

[…] ests of b. cinerea were used. the arrays also include 9,559 random probes as negative controls. data processing, quality controls and differential expression analysis were performed using anais methods . probe hybridization signals were subjected to rma-background correction, quantile normalization, and gene summarization –. genes with a normalized intensity over the threshold […]


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ANAIS institution(s)
UR1290 BIOGER-CPP, INRA, Grignon, France; Institut Jean-Pierre Bourgin, UMR1318, INRA-AgroParisTech, Versailles, France

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