An open source, semi-automatic analysis pipeline and visualization tool for Infinium HumanMethylation450 Assays with a focus on ease of use. ADMIRE features arbitrary experimental settings, quality control, automatic filtering, normalization, multiple testing, differential analyses on arbitrary genomic regions. Paper ready graphics, genome browser tracks and table outputs include summary data and statistics, allowing the fast comparison of methylation profiles between sample groups and the exploration of methylation patterns along the whole genome. The web based version of ADMIRE provides a simple interface to researchers with limited programming skills, whereas the offline version is suitable for integration into custom pipelines.

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ADMIRE classification

ADMIRE specifications

Software type:
Pipeline
Restrictions to use:
None
Output data:
Tables and graphs
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable
Interface:
Command line interface
Input data:
Infinium Human Methylation450K Assay
Biological technology:
Illumina
Programming languages:
Perl, R
Version:
ADMIRE version 1

User report

0 user reviews

0 user reviews

No review has been posted.

ADMIRE forum

No open topic.

ADMIRE classification

ADMIRE specifications

Software type:
Pipeline
Restrictions to use:
None
Output data:
Tables and graphs
Programming languages:
Perl, R
Version:
ADMIRE version 1
Interface:
Web user interface
Input data:
Infinium Human Methylation450K Assay
Biological technology:
Illumina
Computer skills:
Basic
Stability:
Stable

ADMIRE support

Maintainer

Credits

Institution(s)

Max Planck Institute for Heart and Lung Research

Funding source(s)

ECCPS

Link to literature

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