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anamiR

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Identify potential interactions of miRNA-target gene interactions from miRNA and mRNA expression data. AnamiR contains functions for statistical test, databases of miRNA-target gene interaction and functional analysis. The anamiR package provides a whole workflow, which contains important functions like “normalization” used to normalize the expression data with one of three methods, including normal, quantile, rank.invariant, “differExp_discrete” used to find the differential genes or miRNAs from given expression data with one of three statistical methods, including t.test, wilcox. test,limma and DESeq or “miR_converter” to convert the older miRNA annotation to the miRBase 21 version.

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anamiR classification

anamiR specifications

Unique identifier:
OMICS_15723
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
License:
GNU General Public License version 2.0
Version:
1.0.1
Requirements:
R, SummarizedExperiment

anamiR distribution

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anamiR support

Documentation

Maintainer

  • Ti-Tai Wang <>

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