AnatEM specifications


Unique identifier OMICS_20389
Name AnatEM
Alternative name Anatomical Entity Mention
Restrictions to use None
Community driven No
Data access File download
User data submission Not allowed
Version 1.0.2
Content license CC Attribution-ShareAlike 3.0 Unported
Maintained Yes


  • person_outline Sophia Ananiadou

Publication for Anatomical Entity Mention

AnatEM citations


Bio SimVerb and Bio SimLex: wide coverage evaluation sets of word similarity in biomedicine

BMC Bioinformatics
PMCID: 5800055
PMID: 29402212
DOI: 10.1186/s12859-018-2039-z

[…] We assess our representation models using a NER task with four established corpora: the Anatomical Entity Mention corpus (AnatEM) [], the BioCreative II Gene Mention task corpus (BC2GM) [], the BioCreative IV Chemical and Drug NER corpus (BC4CHEMD) and the JNLPBA corpus (JNLPBA) [].The N […]


A neural network multi task learning approach to biomedical named entity recognition

BMC Bioinformatics
PMCID: 5558737
PMID: 28810903
DOI: 10.1186/s12859-017-1776-8

[…] imarily designed for NER and has not been previously used for sequential labeling tasks of the form we consider here. For these reasons, in the following comparison we focus on the remaining corpora: AnatEM, BC2GM, BC4CHEMD, BC5CDR, JNLPBA, Linnaeus, and NCBI-Disease. […]

AnatEM institution(s)
National Centre for Text Mining and University of Manchester, Manchester, UK
AnatEM funding source(s)
Supported by Biotechnology and Biological Sciences Research Council (BBSRC) (BB/G53025X/1) and the Europe PubMed Central Funders (led by Wellcome Trust).

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