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Anatomist specifications


Unique identifier OMICS_19126
Name Anatomist
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Medium
Stability Stable
Maintained Yes


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Anatomist citations


A validation dataset for Macaque brain MRI segmentation

PMCID: 5686468
PMID: 29167818
DOI: 10.1016/j.dib.2017.11.008

[…] A single operator manually segmented the 17 anatomical regions present in the simplified atlas with a Cintiq 24HD touchscreen (Wacom, Saitama, Japan), using the Anatomist software (NeuroSpin, CEA, France). Both the CIVM and the Paxinos atlases were used as references to delineate the structures. A representative example is shown in .Segmentations were stored […]


Reduced age associated brain changes in expert meditators: a multimodal neuroimaging pilot study

Sci Rep
PMCID: 5578985
PMID: 28860449
DOI: 10.1038/s41598-017-07764-x

[…] est performed on the GM volume w-scores maps of the elderly expert meditators was superimposed onto a 3D template surface representation of the right and left hippocampi using the publicly available “Anatomist/BrainVISA” software (, if significant differences were found between elderly expert meditators and elderly controls in their lifestyle measures, we tested […]


New in vivo avatars of diffuse intrinsic pontine gliomas (DIPG) from stereotactic biopsies performed at diagnosis

PMCID: 5581049
PMID: 28881750
DOI: 10.18632/oncotarget.15002
call_split See protocol

[…] de routines written in Matlab (Mathworks, Natick, USA). A specific algorithm was used to correct signal heterogeneities induced by the surface coil [] and 3D visualization of images was obtained with Anatomist software (CEA NeuroSpin, Gif-sur-Yvette, France, […]


Functional segregation and integration within fronto parietal networks

PMCID: 5312783
PMID: 27639357
DOI: 10.1016/j.neuroimage.2016.08.031
call_split See protocol

[…] ; hence the overlap of the visitation maps varied according to inter-subject variability. displays the 3D rendering of the three SLFs onto the average rendering of the MNI152 template obtained using Anatomist 4.2 and BrainVISA 4.3 ( […]


Cell cycle networks link gene expression dysregulation, mutation, and brain maldevelopment in autistic toddlers

Mol Syst Biol
PMCID: 4704485
PMID: 26668231
DOI: 10.15252/msb.20156108

[…] pace (Jenkinson & Smith, ). Registered images were then processed through FSL's brain extraction tool (BET) removing skull and non‐brain tissue (Smith, ). Remaining non‐brain tissue was removed by an anatomist to ensure accurate surface measurement. Gray matter, white matter, and CSF were segmented via a modified version of the FAST algorithm (Zhang et al, ) using partial volumes rather than neigh […]


Differential Dopamine Receptor Occupancy Underlies L DOPA Induced Dyskinesia in a Rat Model of Parkinson's Disease

PLoS One
PMCID: 3948692
PMID: 24614598
DOI: 10.1371/journal.pone.0090759
call_split See protocol

[…] 4-channel surface receive coil and T2-weighted images were acquired over a total acquisition time of 9 minutes. PET/MRI co-registration was then performed using the in-house image processing software Anatomist ( Striatal VOI were delineated using the microPET Data analysis software ASIPro (ASIPro VM, Siemens) and ROI drawn over 13 to 15 continuous planes.To measure in vi […]

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