AncesTree statistics

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Citations per year

Number of citations per year for the bioinformatics software tool AncesTree
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Tool usage distribution map

This map represents all the scientific publications referring to AncesTree per scientific context
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Associated diseases

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Popular tool citations

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AncesTree specifications

Information


Unique identifier OMICS_08946
Name AncesTree
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Stability Stable
Requirements
CMake, Boost, LEMON, CPLEX
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Benjamin Raphael

Publication for AncesTree

AncesTree citations

 (3)
library_books

Reconstructing metastatic seeding patterns of human cancers

2017
Nat Commun
PMCID: 5290319
PMID: 28139641
DOI: 10.1038/ncomms14114

[…] therefore works extremely well among metastases but is not applicable for liquid cancers. On the contrary, tools like PhyloWGS work extremely well in liquid cancers. Last, we compared our results to AncesTree, which roughly identified the evolutionarily related samples in Pam03 but excluded 70% (63/90) of the variants (among them the driver gene mutations in KRAS and ATM) in the inferred phylogen […]

library_books

Spatial and temporal homogeneity of driver mutations in diffuse intrinsic pontine glioma

2016
Nat Commun
PMCID: 4823825
PMID: 27048880
DOI: 10.1038/ncomms11185

[…] f a gene on chromosome X Ref′=Ref × 2+Alt, Alt′=Alt; in case of Copy Neutral LOH Ref′=Ref+Alt/2 and Alt′=Alt/2. The reconstructed trees were redrawn in Graphviz by using in-house scripts adapted from AncesTree to show the trajectories of mutations with contribution ⩾0.05. […]

library_books

AceTree: a tool for visual analysis of Caenorhabditis elegans embryogenesis

2006
BMC Bioinformatics
PMCID: 1501046
PMID: 16740163
DOI: 10.1186/1471-2105-7-275

[…] The technical underpinnings of the application are embodied in five classes: Nucleus; NucleiMgr; Identity; Cell; AncesTree.The Nucleus class contains the elements used to describe each nucleus at each time point. The member variables are all public and are directly accessed wherever needed in the AceTree code. T […]


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AncesTree institution(s)
Center for Computational Molecular Biology and Department of Computer Science, Brown University, Providence, RI, USA

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