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|Interface||Web user interface|
|Restrictions to use||None|
|Output data||Query details including AIM panels with assigned rs numbers, allele frequencies in each population selected, chromosome numbers, Î”, FST, FIC, SIC, In, CompMand the chromosome positions.|
|Database management system||MySQL|
- person_outline Sushil Amirisetty
Publication for AncestrySNPminer
Mapping asthma associated variants in admixed populations
[…] le frequency patterns of 78 GWAS SNPs associated with asthma and deposited at the GWAS Catalogue site (Welter et al., ). We used the 1000 Genomes Project database (http://www.1000genomes.org) and the AncestrySNPminer (Amirisetty et al., ) online tool to explore these variants among African American (ASW), African (YRI), and European American (CEU) samples. The admixed African American sample (ASW) […]
Impact of Population Stratification on Family Based Association in an Admixed Population
[…] ies 3 and 14. Given the vast amount of sequence data, data mining can be a fast and cost-effective approach for investigating the number of SNPs that are required to discriminate between populations. AncestrySNPminer is a web-based bioinformatics tool specifically designed to retrieve informative markers between populations with different allele frequency. The tool includes an automated and simple […]
Self reported race/ethnicity in the age of genomic research: its potential impact on understanding health disparities
[…] ropean ancestry, we examined the allele frequency patterns of 78 GWAS SNPs associated with asthma and deposited at the GWAS Catalog site. We used 1000 Genomes Project (http://www.1000genomes.org) and AncestrySNPminer (https://research.cchmc.org/mershalab/AncestrySNPminer/login.php) to explore these variants among African American (ASW), African (YRI), and European American (CEU) populations. Altho […]
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