AncestrySNPminer statistics

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AncestrySNPminer specifications

Information


Unique identifier OMICS_15482
Name AncestrySNPminer
Interface Web user interface
Restrictions to use None
Output data Query details including AIM panels with assigned rs numbers, allele frequencies in each population selected, chromosome numbers, Δ, FST, FIC, SIC, In, CompMand the chromosome positions.
Programming languages Javascript, PHP, Python
Database management system MySQL
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Sushil Amirisetty

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Publication for AncestrySNPminer

AncestrySNPminer citations

 (3)
library_books

Mapping asthma associated variants in admixed populations

2015
Front Genet
PMCID: 4586512
PMID: 26483834
DOI: 10.3389/fgene.2015.00292

[…] le frequency patterns of 78 GWAS SNPs associated with asthma and deposited at the GWAS Catalogue site (Welter et al., ). We used the 1000 Genomes Project database (http://www.1000genomes.org) and the AncestrySNPminer (Amirisetty et al., ) online tool to explore these variants among African American (ASW), African (YRI), and European American (CEU) samples. The admixed African American sample (ASW) […]

library_books

Impact of Population Stratification on Family Based Association in an Admixed Population

2015
Int J Genomics
PMCID: 4434195
PMID: 26064873
DOI: 10.1155/2015/501617

[…] ies 3 and 14. Given the vast amount of sequence data, data mining can be a fast and cost-effective approach for investigating the number of SNPs that are required to discriminate between populations. AncestrySNPminer is a web-based bioinformatics tool specifically designed to retrieve informative markers between populations with different allele frequency. The tool includes an automated and simple […]

library_books

Self reported race/ethnicity in the age of genomic research: its potential impact on understanding health disparities

2015
Hum Genomics
PMCID: 4307746
PMID: 25563503
DOI: 10.1186/s40246-014-0023-x

[…] ropean ancestry, we examined the allele frequency patterns of 78 GWAS SNPs associated with asthma and deposited at the GWAS Catalog site. We used 1000 Genomes Project (http://www.1000genomes.org) and AncestrySNPminer (https://research.cchmc.org/mershalab/AncestrySNPminer/login.php) to explore these variants among African American (ASW), African (YRI), and European American (CEU) populations. Altho […]


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AncestrySNPminer institution(s)
Cincinnati Children’s Hospital Medical Center, Department of Pediatrics, University of Cincinnati, Cincinnati, OH, USA
AncestrySNPminer funding source(s)
This work was supported by National Institutes of Health grant 1K01HL103165 and P30HL10133.

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