AncestrySNPminer statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

AncestrySNPminer specifications

Information


Unique identifier OMICS_15482
Name AncestrySNPminer
Interface Web user interface
Restrictions to use None
Output data Query details including AIM panels with assigned rs numbers, allele frequencies in each population selected, chromosome numbers, Δ, FST, FIC, SIC, In, CompMand the chromosome positions.
Programming languages Javascript, PHP, Python
Database management system MySQL
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Sushil Amirisetty <>

Additional information


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Publication for AncestrySNPminer

AncestrySNPminer in publications

 (2)
PMCID: 4586512
PMID: 26483834
DOI: 10.3389/fgene.2015.00292

[…] information content, shannon information content, f statistics, informativeness for assignment measure, and the absolute allele frequency differences. in addition, amirisetty et al. () developed ancestrysnpminer, the first web-based bioinformatic tool designed to retrieve aims from public databases (e.g., hapmap, 1000 genomes project)., while sparse ancestry informative markers (aims) […]

PMCID: 4434195
PMID: 26064873
DOI: 10.1155/2015/501617

[…] 3 and 14. given the vast amount of sequence data, data mining can be a fast and cost-effective approach for investigating the number of snps that are required to discriminate between populations. ancestrysnpminer is a web-based bioinformatics tool specifically designed to retrieve informative markers between populations with different allele frequency. the tool includes an automated […]


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AncestrySNPminer institution(s)
Cincinnati Children’s Hospital Medical Center, Department of Pediatrics, University of Cincinnati, Cincinnati, OH, USA
AncestrySNPminer funding source(s)
This work was supported by National Institutes of Health grant 1K01HL103165 and P30HL10133.

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